qrsl1 (qrsl1)


Basic Information

Item Value
gene id qrsl1
gene name qrsl1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 2449392 ~ 2460527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308061.1
aatgaacagggaAATTTACTTCCGGGATGGACGTACTCGACCAATCAGAGATCAGAATCCCGCGACGTCACACAGGTCGACGGAAACCAACATGGCAGCCTACAGTACAGGAAGCGCTGAAATGTGAGAAGTCAGAAAAACGAAGGACTTCTGCAATTATGCTGGGTTTATCCATAAAAGAGGTGTCTGCTGCTCTGAGGGAAGGAAAGCTCTCGGCTACGGAGCTGTGCAGAAAATGTTTGCAGCGCATCAAGAAGACGCGCCACCTCAACGCCTACATCACTGTTACAGAGGAACTGGCAATGAGACAGGCACAGGAAGCGGACGACAGGCTGCTCAGAGGTAAACCTCTTGGTCCACTGGATGGGATTCCTTTCTCCGTAAAAGACAACTTCTGCACAGAAAACATAGAGACCACGTGCGCTTCTCAAATGCTACGAGGTTATTGTCCTCCGTTTAATGCTACAGTGGTGCAGAAGTTACTGGATCAGGGGGCTGTGCTCGTTGGGAAGACCAACTTGGACGAGTTTGCGATGGGgtcggGCAGCACTGATGGAACGTTCGGTCCTGTGAGAAACCCCTGGAGTTACGCTGCTCCATACCGGATGCTCAGCCGTGGAACAGATCCGGACTCTGATTGGGTGATTACAGGCGGGAGTTCAGGAGGAAGTGGAGCGGCTGTGGCATCTCTGAGCAGCTTCCTtgcactGGGCTCTGATACGGGCGGTTCCACTCGTAACCCCGGCTCTCTGTGTGGCGTCGTGACTCTGAAGCCCAGCTACGGTCTGCTGTCTCGTCACGGCCTCATCCCCCTCGTTAACTCCATGGACGTCCCGGGCATCATGAGCAGGAGCGTCCACGACACCGCCATCGCGCTCAATGTTCTTCAGGGTCGGGATGAAAAAGACTCGACTACAGTCCAGGCTCCTGATTCTCATCCCGCTGCTCTCCCTCAGGAGTTTGATGTCAGAGATCTTTGCGTGGGCGTCCCGAAGGAGTACCACGCTCCGGGTCTGTCGTCCGAGACGCTGTCTCAGTGGACCCgtgtggcggccatgtttgaGCGAGCTGGGGCGCGGGTGTGTGAGGTGTCGCTCCCTCACACTCAGTACTCCATCGTGTGCTACCACGTGCTCTGCTGCTGCGAGGTGGCATCCAACATGGCGCGCTTCGACGGCCTGCAGTACGGTCACCGCAGCGCAGTGGAGAGCTCGACTGAAGCGCTGTACGCCACCACGCGGCACGAGGGCTTCAACGACGTCGTGCGGCGGAGGATCCTCTCAGGAAACTACTTCCTGTTGAAACAGAGCTACGAGCGCTACTTTGTGAAGGCTCAGCAGATAAGGCGTCTGATCACGGAGGATTTCCGGCGCGTGTTCGCCTCCGGCGTGGACGTCCTCCTCACGCCCACCACACTGAGCGACGCAGCCACGTACTCGGACTTCATCCAGGAAGACAATCGCACACGCAGCGCACAGGATGACATCTTCACCCAGCCCGTCAACTTAGCAGGTCTCCCCGCTGTCACCGTCCCGACGTCCCTCTCCAGCCGAGGACTTCCTTTCAGCCTGCAGCTGATTGGCCAGCGCCTCCAGGACAGGAAGTTGCTGGCGGTGGCTCATTGGATGGAGCAGCAGCTCGATTTTCCCCTCATCCGATTTCACGACGAAGACGACGTACAGGACTCAAAATCAGAGCGGAACAGAGACCGAGAACGCACGTCAGGGTCGTGAATGATGACGTCATCTCATATGAACACGTCGTAGAGAAATCCGCCATGGCTTTACGGCTTTTTTTAACATCCTGGAATGGATCTTGTGTCTCAAAGCATAACACAGTTTTCTCTTCATGATTGTAAGGATCTAAAGATATTTAACACACTATGAGAAATTAAAGCCACTTTGTCCTAAATGATACCAAAGCAAATTtcagctgttgaattctggattctgattggactTGTACGGCGGACAGTCCAcatctaaaactaataaaaaaaattgttatttaacaacaaaatcCTGACACATGTTTcggtggtgaagttttctgtaagggaacgtttatttaatgtttatgctcagaggtgaagctgtaacttgacgttttctgacatcttcgggaggctggtgagggaacaactgtttatagctgctactgCTGCAAGTGACAAATTGTATCGTGGActttccataacattaaagacaactataaacaga

Function

symbol description
qrsl1 Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 40. Orthologous to human QRSL1 (glutaminyl-tRNA amidotransferase subunit QRSL1).

NR:

description
glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02433 gatA, QRSL1; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308061.1 True 2219 mRNA 0.53 11 2449392 2460527

Neighbor

gene id symbol gene type direction distance location
iars2 iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 coding downstream 36477 2398016 ~ 2412915 (-)
LOC113547740 LOC108261668 coding downstream 459965 1972315 ~ 1989427 (-)
LOC113547742 LOC108261668 coding downstream 484177 1953194 ~ 1965215 (-)
LOC117598256 NA coding downstream 648360 1758951 ~ 1801032 (-)
LOC117598315 NA coding downstream 705052 1736186 ~ 1744340 (-)
crybg1a NA coding upstream 17262 2477789 ~ 2573533 (-)
clic4 clic4,LOC107654867 coding upstream 117623 2578150 ~ 2614364 (-)
srrm1 srrm1,LOC107583602,LOC107721297 coding upstream 161892 2622419 ~ 2642156 (-)
tdh2 tdh2,LOC108269662,LOC108433314,LOC107583601,LOC107582959,LOC107659247,LOC107721289 coding upstream 183522 2644049 ~ 2653264 (-)
zgc:154055 LOC108270438,LOC108433315 coding upstream 201634 2662161 ~ 2677478 (-)
G158097 NA non-coding downstream 82353 2361719 ~ 2367039 (-)
G157734 NA non-coding downstream 116717 2312916 ~ 2332675 (-)
G157724 NA non-coding downstream 154860 2294295 ~ 2294532 (-)
G157704 NA non-coding downstream 216559 2232587 ~ 2232833 (-)
G157692 LOC108270146 non-coding downstream 241456 2207670 ~ 2207936 (-)
G158111 NA non-coding upstream 114785 2575312 ~ 2603151 (-)
LOC117598373 NA non-coding upstream 220565 2681092 ~ 2683413 (-)
LOC117598338 NA non-coding upstream 236941 2697468 ~ 2698647 (-)
G158167 fam167b,LOC108270378,LOC107659234,LOC108433301 non-coding upstream 251032 2711559 ~ 2732790 (-)
G158205 pabpc4 non-coding upstream 344720 2805247 ~ 2809575 (-)
G157723 NA other downstream 157933 2291022 ~ 2291459 (-)
LOC113547724 LOC108269731 other downstream 538088 1858555 ~ 1911304 (-)
LOC113547736 hmx1,LOC108269487 other downstream 842817 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 1041830 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 1904633 514801 ~ 544759 (-)
G158503 NA other upstream 907577 3368104 ~ 3369756 (-)
G158507 NA other upstream 930213 3390740 ~ 3394808 (-)
G158509 NA other upstream 934964 3395491 ~ 3398763 (-)
LOC117598319 NA other upstream 948846 3409373 ~ 3411811 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 2280754 4741281 ~ 4750234 (-)

Expression


Co-expression Network