G158111


Basic Information

Item Value
gene id G158111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 2575312 ~ 2603151 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU187424
ctctctctctctctctctctctctctccctctctctctctctctctctctctctctctctctctctctctctcttgctgtctaccagtttaaatgattttaacatTACCATACTTTGTTAAAAGTGAATCCTGGCTACTTTCTCCATTTCCAAACCAGAACAAGACTGTCAGCTCCGcccatttttccatttcttgGACATGCAGTAAAGGGCTCTAAActttacaaactgctcctttaatctgagatataatctttaaaataattttgaaaataatcacaaatctgttatatttttaaaagaatgaagAAGACTTGAATGCATGAATCTGGGGGGAAAAAcgagcaattttttttcttttgtagtgaaaacaaaatgttgatgtttctcCTGCTAGAAAGTTCTTAGTACGAATTTTTTCTCACGCTCTCGACCTGGCCCGTCAAAACCCGAGCTCAAAAAATGCTCAATATACCGAGAtctaatgaagaaaaagaatgcTGTGATTTGAGATGTTCCTCGTCCCACACCGTGAGGAATTCGGATTCTCTGAACTGAATCATGTGCCTTCTGAAGATCTAAATATCAGTccaattatgtattttatttttttttttaaattttgttcagAAAGATGAGAGATGTGAACTCTCGTCTCTCACCGTTATCTGACTCCGATACTGAATGTTGAAGGTTTTGGTGCCTttcttctgtttgtctgtttatgcataacacacacacacacacacacacacacacacacacgttcctaCACTGCTCATGGAAACGCTGCATGTTACGCCATCTCGCTCTCGTCAATAATAAACTGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187424 True 833 lncRNA 0.39 2 2575312 2603151

Neighbor

gene id symbol gene type direction distance location
crybg1a NA coding downstream 1779 2477789 ~ 2573533 (-)
qrsl1 qrsl1 coding downstream 114785 2449392 ~ 2460527 (-)
iars2 iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 coding downstream 162397 2398016 ~ 2412915 (-)
LOC113547740 LOC108261668 coding downstream 585885 1972315 ~ 1989427 (-)
LOC113547742 LOC108261668 coding downstream 610097 1953194 ~ 1965215 (-)
srrm1 srrm1,LOC107583602,LOC107721297 coding upstream 19268 2622419 ~ 2642156 (-)
tdh2 tdh2,LOC108269662,LOC108433314,LOC107583601,LOC107582959,LOC107659247,LOC107721289 coding upstream 40898 2644049 ~ 2653264 (-)
zgc:154055 LOC108270438,LOC108433315 coding upstream 59010 2662161 ~ 2677478 (-)
tmem54a NA coding upstream 159116 2762267 ~ 2776686 (-)
LOC113545141 kbtbd11,LOC102794541 coding upstream 235918 2839069 ~ 2846133 (-)
G158097 NA non-coding downstream 208273 2361719 ~ 2367039 (-)
G157734 NA non-coding downstream 242637 2312916 ~ 2332675 (-)
G157724 NA non-coding downstream 280780 2294295 ~ 2294532 (-)
G157704 NA non-coding downstream 342479 2232587 ~ 2232833 (-)
G157692 LOC108270146 non-coding downstream 367376 2207670 ~ 2207936 (-)
LOC117598373 NA non-coding upstream 77941 2681092 ~ 2683413 (-)
LOC117598338 NA non-coding upstream 94317 2697468 ~ 2698647 (-)
G158167 fam167b,LOC108270378,LOC107659234,LOC108433301 non-coding upstream 108408 2711559 ~ 2732790 (-)
G158205 pabpc4 non-coding upstream 202096 2805247 ~ 2809575 (-)
G158218 NA non-coding upstream 233464 2836615 ~ 2836850 (-)
G157723 NA other downstream 283853 2291022 ~ 2291459 (-)
LOC113547724 LOC108269731 other downstream 664008 1858555 ~ 1911304 (-)
LOC113547736 hmx1,LOC108269487 other downstream 968737 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 1167750 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 2030553 514801 ~ 544759 (-)
G158503 NA other upstream 764953 3368104 ~ 3369756 (-)
G158507 NA other upstream 787589 3390740 ~ 3394808 (-)
G158509 NA other upstream 792340 3395491 ~ 3398763 (-)
LOC117598319 NA other upstream 806222 3409373 ~ 3411811 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 2138130 4741281 ~ 4750234 (-)

Expression


Co-expression Network