LOC113545102 (banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308)


Basic Information

Item Value
gene id LOC113545102
gene name banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 4741281 ~ 4750234 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU188746
TGTGATCATCCCTGTGCTCCTCATAAGACGGGTTCTTTCTCCTGattggttgtttttttaaaaaaaaaaagtgattcacctgtgcaggtgagagtgagacatgCAATTAGAAAGTAAATCCGTCAGGagtcactgaaactgaaacactggTGTAAAGGGAAATTAAATATCACCTGCTGTTTACTACAATAATGTGCCCTTAATGATTCCTGTGTAGATCTTCAGTTTCACTTCATCTTGCCGTTTCCACGAGCAGCAGCTATAACTTGGGCAGCAAACAGTCTGGGGATGTCAACCACCTCCCAGAAGCACAGGGACTTTGTGGCCGAGCCCATGGGGGATAAACCGGTCACTGCGCTGTCGGGCATCGGAGATGTTCTGGGCAAGAAGCTTGAAGAGCAGGGCTTTGACAAAGCATTTGTAGTGTTGGGACAGTTCCTTTTGCTGAGGAAGGACTGCGAACTGTTCTCCGAGTGGCTGAAGGACACCAGCGGGGCCAATTCGAGACAAGCGGCCTCCTGTTCTCAGTGTCTGGCTGAGTGGTGTAACAACTTTCTCTGAATCTGGAggtcttttccttcctttcagTACTTTCACGTGTGCTATCATGGAACAGTTTTAACCTTTGAAcaaatctatatctatatgtGTCCTCTGTATTTTGTCTTCTCTGAGTTGCTGTTCAGCAGTAATGCTGTATTTGATGTTACTGTGTAAAAGCATTGACGGTTCTTAATAGAATATTAAGCTGACTTTAAAAGAATAAAGTTTGGAGTAAAATTTTCAGCAACTTTCAGTGACTTAACCCAATGAATGAGTTGTTGCTTGATTTGATTCTCGGTTTGGAAAAACCTACAAATGACTGATAAGGTTAAATTTGAATCGGTGTGTAAAGGGAAATGGCTGACATACTGGGAGTACAGTTTAGAGACGTGTTCTTGATCTGCTGCGTGCTATACGTGCTCGAACACATGTCTCAAGATGAGCTTGATTTTATCCAATGAATGAACCTGGGCAAGTTGGAACAGGGACAATTCTGAAATGAGGAAATGCATAGGATTGATAAATGCTGCTACATGTCCTTAAATGTTGCTACTTTcctctctgaaagtattggaacagcaaggctaattcttttgtttttgctatacactgaagacatttgggtttcagatcaaaagatgaatatgagatgattgatcagaatttcagctttgttTTCCTGATAATTATCTAGATGTGTATATTTTACagctagatgtgatgtgtgtgtgtgtat

Function

symbol description
banf1 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188746 True 1279 TUCP 0.41 4 4741281 4750234

Neighbor

gene id symbol gene type direction distance location
znf593 znf593 coding downstream 1175565 3563006 ~ 3565716 (-)
selenon selenon,sepn1 coding downstream 1181829 3550613 ~ 3559452 (-)
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding downstream 1218134 3513822 ~ 3523147 (-)
stac stac coding downstream 1275296 3416926 ~ 3465985 (-)
LOC117598325 NA coding downstream 1339289 3399563 ~ 3401992 (-)
otx1 otx1b,LOC108269525,LOC107715971,LOC107744633,LOC107583562,LOC107553603,LOC107670883 coding upstream 335180 5085414 ~ 5092127 (-)
ehbp1 ehbp1,LOC107715969,LOC107744614 coding upstream 345983 5096217 ~ 5255252 (-)
b3gnt2b LOC108269904,LOC108431672 coding upstream 526454 5276688 ~ 5301960 (-)
si:ch211-63b16.4 LOC108269903 coding upstream 584794 5335028 ~ 5357652 (-)
xpo1b xpo1b,LOC108269901,LOC108438731,LOC107715966,LOC107744605,LOC107689808 coding upstream 615703 5365937 ~ 5389895 (-)
G159221 NA non-coding downstream 95167 4621459 ~ 4646114 (-)
G159202 NA non-coding downstream 198088 4542856 ~ 4543193 (-)
G159087 rpl13a,LOC107720993,LOC107670882,LOC107583572,LOC106563035 non-coding downstream 369849 4366926 ~ 4371432 (-)
G159084 NA non-coding downstream 377009 4362458 ~ 4364272 (-)
G158857 NA non-coding downstream 822510 3917002 ~ 3918771 (-)
G159289 NA non-coding upstream 24192 4774426 ~ 4774986 (-)
G159292 NA non-coding upstream 29170 4779404 ~ 4779989 (-)
G159312 NA non-coding upstream 80056 4830290 ~ 4836045 (-)
G159578 NA non-coding upstream 128080 4878314 ~ 4879897 (-)
G159616 NA non-coding upstream 193831 4944065 ~ 4944272 (-)
LOC117598319 NA other downstream 1329470 3409373 ~ 3411811 (-)
G158509 NA other downstream 1342518 3395491 ~ 3398763 (-)
G158507 NA other downstream 1346473 3390740 ~ 3394808 (-)
G158503 NA other downstream 1371525 3368104 ~ 3369756 (-)
G157723 NA other downstream 2449822 2291022 ~ 2291459 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other upstream 185860 4936094 ~ 4941315 (-)
eno4 eno4 other upstream 974836 5725070 ~ 5735741 (-)
ncmap NA other upstream 1243806 5994040 ~ 6010988 (-)
cnksr1 cnksr1 other upstream 1350431 6100665 ~ 6180678 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other upstream 1551300 6301534 ~ 6352654 (-)

Expression


Co-expression Network