znf593 (znf593)


Basic Information

Item Value
gene id znf593
gene name znf593
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 3563006 ~ 3565716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944225.2
tgtgcgcatgcgcagtagtCTCCCACATGTCGCCTTGAACCCGGAAGTAAATATTTGAAGGCGTAAACACGTGGATTGCTGAGCTCGCAAGTCGATGAAATAACAGCATTATAAGTCATGGGCAAATCCAAGCAGGTGGGCAAccacaaaaatggcaaaaagaaGAACATTGCAAAGACATGGAAGACAAAGAGAAGGACTAAGGACCTGGACCAGATCCACACTGACATGATCCCTGCCAATGCAGCCAAACTGCTGAAGCAGGAAGTGGACTATGACGTCACAGGCTTCGCTCAGCACTACTGCCTGCACTGCGCGCGCTACTTTGTTGACCTGAAGACCCTGAAGGAGCATTTCAAGACCAAAGTCCACAAAAAACGgttGAAGGAGCTGAGAGAGGAGCCGTACACTCAGGCCGAGGCGGAGAGAGCGGCAGGAATGGGCTCGTACGTCCCGCCTAAAAAGGTGGAAGTGCACACGCAGCAGGTGGAGGAGGACATGGAGTGAACGTCGTCTGTCGTCTCAACACCACTGAAGCATGAAGATCTACATTTATCCACATTTTTACCTAAAAAATATTAGCTACCCGACAGTACCTCATGTCAGAGTCTGACTTTCTTAAGACGCCTTCTCCAAGACGTACACAGACAACCGTCCTCACATCCTCATAAAGTTGTTTACTCAAGCATAAGGCATGTCCggctttaaattatttttaacatggAAGAGCTGGTGTAGGATTACAGCAGGATTCGGATAATTAACCGTTTTATTCATAGTGTTGAGTGTTAAAGCACTACACAGTGTATTATCAGGTGTATTATAGTGCTGAAAAGCCTGAGCTGTTTAGTGCACTGACTGAGAAGCTCCTGATTGGCAATttacctgtcaatcaaatcccacagtaacacactgatgtggtgtgtgtgagcactggtggtttattgtgtgtgtgtgtgtgtgaggatttgACTGGACTGTGACCACAAACGGCTCCATATGTAAattcatatgtaaataaattgtgatATCACAGTTA

Function

symbol description
znf593 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF593 (zinc finger protein 593).

NR:

description
zinc finger protein 593

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14821 BUD20; bud site selection protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944225.2 True 1039 mRNA 0.46 4 3563006 3565716

Neighbor

gene id symbol gene type direction distance location
selenon selenon,sepn1 coding downstream 3554 3550613 ~ 3559452 (-)
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding downstream 39859 3513822 ~ 3523147 (-)
stac stac coding downstream 97021 3416926 ~ 3465985 (-)
LOC117598325 NA coding downstream 161014 3399563 ~ 3401992 (-)
spdya spdya coding downstream 196986 3356795 ~ 3366020 (-)
otx1 otx1b,LOC108269525,LOC107715971,LOC107744633,LOC107583562,LOC107553603,LOC107670883 coding upstream 1519698 5085414 ~ 5092127 (-)
ehbp1 ehbp1,LOC107715969,LOC107744614 coding upstream 1530501 5096217 ~ 5255252 (-)
b3gnt2b LOC108269904,LOC108431672 coding upstream 1710972 5276688 ~ 5301960 (-)
si:ch211-63b16.4 LOC108269903 coding upstream 1769312 5335028 ~ 5357652 (-)
xpo1b xpo1b,LOC108269901,LOC108438731,LOC107715966,LOC107744605,LOC107689808 coding upstream 1800221 5365937 ~ 5389895 (-)
LOC117598377 NA non-coding downstream 156576 3403299 ~ 3406430 (-)
G158505 NA non-coding downstream 181183 3378654 ~ 3381823 (-)
LOC113545063 NA non-coding downstream 269254 3291165 ~ 3293752 (-)
G158466 NA non-coding downstream 298994 3263782 ~ 3264012 (-)
G158424 NA non-coding downstream 381138 3181642 ~ 3181868 (-)
G158641 arhgef33 non-coding upstream 22581 3588297 ~ 3589105 (-)
G158649 NA non-coding upstream 70920 3636636 ~ 3636855 (-)
thumpd2 NA non-coding upstream 73756 3639534 ~ 3639799 (-)
G158690 NA non-coding upstream 144782 3710498 ~ 3741001 (-)
G158857 NA non-coding upstream 351286 3917002 ~ 3918771 (-)
LOC117598319 NA other downstream 151195 3409373 ~ 3411811 (-)
G158509 NA other downstream 164243 3395491 ~ 3398763 (-)
G158507 NA other downstream 168198 3390740 ~ 3394808 (-)
G158503 NA other downstream 193250 3368104 ~ 3369756 (-)
G157723 NA other downstream 1271547 2291022 ~ 2291459 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 1175565 4741281 ~ 4750234 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other upstream 1370378 4936094 ~ 4941315 (-)
eno4 eno4 other upstream 2159354 5725070 ~ 5735741 (-)
ncmap NA other upstream 2428324 5994040 ~ 6010988 (-)
cnksr1 cnksr1 other upstream 2534949 6100665 ~ 6180678 (-)

Expression


Co-expression Network