selenon (selenon,sepn1)


Basic Information

Item Value
gene id selenon
gene name selenon,sepn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 3550613 ~ 3559452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944242.2
TGTCACAGCTTACGTAGTGCGCTTATGTAGGGAACTGGGAAGCATTTGGGATTCGGCCAGGATGATGTGAAAGACAGTTTCTCCTCTGCGAAAAAAGAGAACTACAGGACTGGCTGGAAAAGTCGGGGCTTGTGGAGGTTCGGCGGTTTTCTGGGGCGATTTTCGGTGCAACACAAACCGCAGGAAAGAGATTATAAATGTAAAGCAGAGGCAGGTTTAGGGATGGAGGGGGATGTGGATAAAGCAGCGCTGgtagaagaagaggagaagaagaaatcaGTAAATAATGATGTAGCTCACGATTCGGGGAAAACACCTGGGCGCATCTGGACTTTTTGGACTTTATTCGTGGTCGCGTGCGTTCCGGTAATCGGTGCTGGGAtccagtatttcagaaacacacacatctcccaGCGTCATGAAGCGGCGCTGAAGACCCTAGGAGCAGAAGGACTTTTCCTCTTCTCATCTCTGGATGTAGATCACGACCTCTACCTGAGTCCCGAGGAGTTTAAACCCATCGCTGAAAAACTCACAGGTGTCGCTCCTCCTGCGGAGTTTGAAGAGGAGTTCATCGCTGACCCGAACGGAGAGACGCTCACGCTTCATGCAGCCATGCAGCCGCTTCTGCTCGAGACCATGACCAAGAGCAAGGATGGCTTTCTGGGGGTATCCCACAGTGCGCTGAGCGGCCTGCGTTCGTGGAAGCGTCCCGCTGTTCCATCCTCCAGCTTCTCCGCTGCTCATTTCCGGGTCTTTCTGCCCCCGAAGGGTAAAGGGGAGCCGGGGGACACGTGGTGGATCATACCAAGTGAGCTCAATATCTTCACTGGATATCTACCCAATAATCGGTACCACCCACCCACCCCCCGCGGCAAGGAGGTTCTGATCCACACCCTGCTCAGCATGTTTCATCCTCGCCCATTCATCAAATCCCGCTTCGCTCCTCAGGGAGCCGTGGCCTGCATACGAGCCGTCAGCGACTTCTACTACGACATCGTGTTCAGGATACACGCCGAGTTCCAGCTGAATGACGTTCCCGATTTCCCGTTCTGGTTCACACCCGGTCAGTTCGCTGGCCATGTCGTGCTCTCCAGAGACGCTTCTCATGTCCGAGACTTCCATCTGTATGTCCCTAATGACAAGTCTCTGAATGTCGATATGGAGTGGCTGTATGGTGCCAGTGAGAGCAGCAGCATGGAGGTGGATATCGGCTACCTGCCACAGATGGAGTTGCGAGCGGCCGGCCCGTCCACGCCCTCCGTGATCTACGATGAACAGGGGAAGGTGATTGACACccgagaggagggaggagaacCCATCCACTTTGTGTTCGAGGAGATCCACTGGAGCTCTGAGATCAGCCGAGACGAGGCAGCCGGTCGCCTCGAGGTCACTTTTTACCCTTTCAAGAAGGTGGCGTACCTGCCTTTCTCAGAGGCCTTCAGCAGGGCAGAAGCAGAGGGGAAACTGGTTCACTCCATCCTGCTCTGGGGAGCGCTGGACGATCAGTCCTGCTGAGgttcgGGGCGAACTCTCCGGGAGACAGTCCTGGAAAGTTCGCCCGTCCTGGCCTTGCTCAACCAGAGCTTCATCAGCAGCTGGTCTCTCGTCAAAGAGCTGGAGGACCTGCAGGCTGATGAGAAGAATCTGGACTTGAGTCAGAAGGCGCGTTTACACCTGGAGCAGTACAGCTTCCCTGTGGAAATGATGGTGGCGTTGCCTAATGGCACAGTGGTTCACCACATCAACGCTAACAACTTCCTGGACCAGACGTCCATGAAGCCGGAGGAGGACGAGCCGGGGTTCAGCTTCTCGGGCGGGTTCGAGGACCCGTCCACCTCCACCTACATCCGCTTCCTGCAGGAGGGACTGGACAAGGCCAAAGCTTACCTCCAGTCagcatcataaacacacacacacacacacacacacacctctcagtCTAACAGCTAGACTCGTCCGTGTCTCACACACGTGAACGGGGAATTATTTCCTGGACCTTGTGCTGCACTGAATTCTGGGGATTTCTCTCCTGTCCTGTAGCAAGTGACTGCAGATTTTTCTACATGTATCTGGTAATACAGTGAATACGGTAACACTATTTTTGTGACCTGGGTTTAAGCGTAGTGTGCTGGTTCATCAACACTCCAGCTCTGACCTAGAGAAGaggcatttattaaagaaatagttcagccaaaaaaaaaaaaaa

Function

symbol description
selenon Predicted to enable oxidoreductase activity. Involved in several processes, including calcium-mediated signaling; muscle cell development; and regulation of ryanodine-sensitive calcium-release channel activity. Acts upstream of or within skeletal muscle fiber development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; mesoderm; nervous system; tail bud; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and rigid spine muscular dystrophy 1. Orthologous to human SELENON (selenoprotein N).
sepn1 selenoprotein N

NR:

description
selenoprotein N

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19874 SEPN1; selenoprotein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944242.2 True 2212 mRNA 0.54 12 3550613 3559452

Neighbor

gene id symbol gene type direction distance location
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding downstream 27466 3513822 ~ 3523147 (-)
stac stac coding downstream 84628 3416926 ~ 3465985 (-)
LOC117598325 NA coding downstream 148621 3399563 ~ 3401992 (-)
spdya spdya coding downstream 184593 3356795 ~ 3366020 (-)
wdr43 wdr43,LOC107583586,LOC107583058,LOC107654884 coding downstream 204798 3328678 ~ 3345815 (-)
znf593 znf593 coding upstream 3554 3563006 ~ 3565716 (-)
otx1 otx1b,LOC108269525,LOC107715971,LOC107744633,LOC107583562,LOC107553603,LOC107670883 coding upstream 1525962 5085414 ~ 5092127 (-)
ehbp1 ehbp1,LOC107715969,LOC107744614 coding upstream 1536765 5096217 ~ 5255252 (-)
b3gnt2b LOC108269904,LOC108431672 coding upstream 1717236 5276688 ~ 5301960 (-)
si:ch211-63b16.4 LOC108269903 coding upstream 1775576 5335028 ~ 5357652 (-)
LOC117598377 NA non-coding downstream 144183 3403299 ~ 3406430 (-)
G158505 NA non-coding downstream 168790 3378654 ~ 3381823 (-)
LOC113545063 NA non-coding downstream 256861 3291165 ~ 3293752 (-)
G158466 NA non-coding downstream 286601 3263782 ~ 3264012 (-)
G158424 NA non-coding downstream 368745 3181642 ~ 3181868 (-)
G158641 arhgef33 non-coding upstream 28845 3588297 ~ 3589105 (-)
G158649 NA non-coding upstream 77184 3636636 ~ 3636855 (-)
thumpd2 NA non-coding upstream 80020 3639534 ~ 3639799 (-)
G158690 NA non-coding upstream 151046 3710498 ~ 3741001 (-)
G158857 NA non-coding upstream 357550 3917002 ~ 3918771 (-)
LOC117598319 NA other downstream 138802 3409373 ~ 3411811 (-)
G158509 NA other downstream 151850 3395491 ~ 3398763 (-)
G158507 NA other downstream 155805 3390740 ~ 3394808 (-)
G158503 NA other downstream 180857 3368104 ~ 3369756 (-)
G157723 NA other downstream 1259154 2291022 ~ 2291459 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 1181829 4741281 ~ 4750234 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other upstream 1376642 4936094 ~ 4941315 (-)
eno4 eno4 other upstream 2165618 5725070 ~ 5735741 (-)
ncmap NA other upstream 2434588 5994040 ~ 6010988 (-)
cnksr1 cnksr1 other upstream 2541213 6100665 ~ 6180678 (-)

Expression


Co-expression Network