thumpd2


Basic Information

Item Value
gene id thumpd2
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 3639534 ~ 3639799 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU188019
atgtaaacaaaatgtgtaTCCTTGAGGCTACCACCTCAGCAacaaggaatggtacagtttagtactttttttttatttgttttttgtatggAGTGTATGGAGTAGAGACTCATTTGacactttcattttcaaaaGTACATGGACTGATTTTGGACATTCATTACTCTATGTAGGGTGCCAAAACTTCTATGctaccctacatagtgcacttgTGAAGGACATCTGGAGTTATTTGTGATTCAGCCATGAAGAAGACACTTTCAGAC

Function

NR:

description
THUMP domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188019 False 266 lncRNA 0.37 1 3639534 3639799

Neighbor

gene id symbol gene type direction distance location
znf593 znf593 coding downstream 73756 3563006 ~ 3565716 (-)
selenon selenon,sepn1 coding downstream 80020 3550613 ~ 3559452 (-)
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding downstream 116325 3513822 ~ 3523147 (-)
stac stac coding downstream 173487 3416926 ~ 3465985 (-)
LOC117598325 NA coding downstream 237480 3399563 ~ 3401992 (-)
otx1 otx1b,LOC108269525,LOC107715971,LOC107744633,LOC107583562,LOC107553603,LOC107670883 coding upstream 1439275 5085414 ~ 5092127 (-)
ehbp1 ehbp1,LOC107715969,LOC107744614 coding upstream 1450078 5096217 ~ 5255252 (-)
b3gnt2b LOC108269904,LOC108431672 coding upstream 1630549 5276688 ~ 5301960 (-)
si:ch211-63b16.4 LOC108269903 coding upstream 1688889 5335028 ~ 5357652 (-)
xpo1b xpo1b,LOC108269901,LOC108438731,LOC107715966,LOC107744605,LOC107689808 coding upstream 1719798 5365937 ~ 5389895 (-)
G158649 NA non-coding downstream 2617 3636636 ~ 3636855 (-)
G158641 arhgef33 non-coding downstream 50367 3588297 ~ 3589105 (-)
G158610 NA non-coding downstream 52915 3511681 ~ 3586557 (-)
LOC117598377 NA non-coding downstream 233042 3403299 ~ 3406430 (-)
G158505 NA non-coding downstream 257649 3378654 ~ 3381823 (-)
G158690 NA non-coding upstream 64359 3710498 ~ 3741001 (-)
G158857 NA non-coding upstream 270863 3917002 ~ 3918771 (-)
G159084 NA non-coding upstream 716319 4362458 ~ 4364272 (-)
G159087 rpl13a,LOC107720993,LOC107670882,LOC107583572,LOC106563035 non-coding upstream 720787 4366926 ~ 4371432 (-)
G159202 NA non-coding upstream 896717 4542856 ~ 4543193 (-)
LOC117598319 NA other downstream 227661 3409373 ~ 3411811 (-)
G158509 NA other downstream 240709 3395491 ~ 3398763 (-)
G158507 NA other downstream 244664 3390740 ~ 3394808 (-)
G158503 NA other downstream 269716 3368104 ~ 3369756 (-)
G157723 NA other downstream 1348013 2291022 ~ 2291459 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 1095142 4741281 ~ 4750234 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other upstream 1289955 4936094 ~ 4941315 (-)
eno4 eno4 other upstream 2078931 5725070 ~ 5735741 (-)
ncmap NA other upstream 2347901 5994040 ~ 6010988 (-)
cnksr1 cnksr1 other upstream 2454526 6100665 ~ 6180678 (-)

Expression


Co-expression Network