G159202


Basic Information

Item Value
gene id G159202
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 4542856 ~ 4543193 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU188672
TACCTGGTGAGATGGGGCGGCtggaggagggggagggggtGTAGGGGGTCGGACTGGACACGGTACGAGCTCTCAGTCCCTGAGCagacatttcattaaaatacctacaagaccgagagagagagacagcaagagagacagaaagacacacacacacagtgcgaCACAGAGATATCCCccaagagagagagcgagagagagagaagagagagagagagaagagaaggagagagagagagagacagagagagggtgacagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188672 True 285 lncRNA 0.54 2 4542856 4543193

Neighbor

gene id symbol gene type direction distance location
znf593 znf593 coding downstream 977140 3563006 ~ 3565716 (-)
selenon selenon,sepn1 coding downstream 983404 3550613 ~ 3559452 (-)
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding downstream 1019709 3513822 ~ 3523147 (-)
stac stac coding downstream 1076871 3416926 ~ 3465985 (-)
LOC117598325 NA coding downstream 1140864 3399563 ~ 3401992 (-)
otx1 otx1b,LOC108269525,LOC107715971,LOC107744633,LOC107583562,LOC107553603,LOC107670883 coding upstream 542221 5085414 ~ 5092127 (-)
ehbp1 ehbp1,LOC107715969,LOC107744614 coding upstream 553024 5096217 ~ 5255252 (-)
b3gnt2b LOC108269904,LOC108431672 coding upstream 733495 5276688 ~ 5301960 (-)
si:ch211-63b16.4 LOC108269903 coding upstream 791835 5335028 ~ 5357652 (-)
xpo1b xpo1b,LOC108269901,LOC108438731,LOC107715966,LOC107744605,LOC107689808 coding upstream 822744 5365937 ~ 5389895 (-)
G159087 rpl13a,LOC107720993,LOC107670882,LOC107583572,LOC106563035 non-coding downstream 171424 4366926 ~ 4371432 (-)
G159084 NA non-coding downstream 178584 4362458 ~ 4364272 (-)
G158857 NA non-coding downstream 624085 3917002 ~ 3918771 (-)
G158690 NA non-coding downstream 801855 3710498 ~ 3741001 (-)
thumpd2 NA non-coding downstream 896717 3639534 ~ 3639799 (-)
G159221 NA non-coding upstream 78266 4621459 ~ 4646114 (-)
G159268 NA non-coding upstream 198328 4741521 ~ 4742681 (-)
G159267 NA non-coding upstream 199572 4742765 ~ 4744266 (-)
G159289 NA non-coding upstream 231233 4774426 ~ 4774986 (-)
G159292 NA non-coding upstream 236211 4779404 ~ 4779989 (-)
LOC117598319 NA other downstream 1131045 3409373 ~ 3411811 (-)
G158509 NA other downstream 1144093 3395491 ~ 3398763 (-)
G158507 NA other downstream 1148048 3390740 ~ 3394808 (-)
G158503 NA other downstream 1173100 3368104 ~ 3369756 (-)
G157723 NA other downstream 2251397 2291022 ~ 2291459 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 198088 4741281 ~ 4750234 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other upstream 392901 4936094 ~ 4941315 (-)
eno4 eno4 other upstream 1181877 5725070 ~ 5735741 (-)
ncmap NA other upstream 1450847 5994040 ~ 6010988 (-)
cnksr1 cnksr1 other upstream 1557472 6100665 ~ 6180678 (-)

Expression


Co-expression Network