wdr43 (wdr43,LOC107583586,LOC107583058,LOC107654884)


Basic Information

Item Value
gene id wdr43
gene name wdr43,LOC107583586,LOC107583058,LOC107654884
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 3328678 ~ 3345815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944214.2
CACAGCGCTCCGAGAATGGCGGCCGACGGAGGCAGTGCTCCTTCTTCAGCGCCGACGCTGCCGTTCTTCTCGCCGGGATCGCGGCACTATCTCGCCGTGTGCGCGCAGGACGGGCGCCTGCGGATCTGGAACTCCGACTCGCACGCGCTCCACCGGGAATACGTGCCTTCCGCGCACCTCAGCGCCACTTGCACTTGCATCGCCTGGGGACCATGCCGAGCGACCAAGGAGGGGCctcagaggaagaagaggaagtcGGAGGCGGGTCCGGCGTCGGCTCAGCAGTCAGATCTGTTGGCTCTGGGCACGGCAGCCGGCACCGTCCTCATCTACAGCACAGTGAAGGGAGATCTCCAGTGCACTCTGgatGGAGGACATAGTGGAAGTGTGAACAGCGTCCAGTGGCACCCTGAAGAATCTGTTCTGTACAGTGGCTCAGACGACACACACATCGCAGAGTGGGACCTGAAGACGGGCAAAACACGCTGTAAATGGAAAGCAGACAGAGCAGCGGTGACGAGTCTGTGTGTGAGTCCTGACGGGAAACTCCTGCTCTCTGCCGGAATGACCATCAAAATGTGGGACCTGGAGAACAAGGAGGTGTACAGGAAGTTCACAGGTCACTCGACCACGGTAACGACCCTGTGCTTCGCCACGACCCGACCCCCGGACAGCGACAGCCTCTACTTCCTGTCTGGAGCGGCTCACGACAGACTGCTCAGTGTGTGGCAGGTACGCTCTGACGGCAAAGACAAGAACTCGGTGGTGTCGTTCACGCTGACAGACGAACCCCAACACATCGACCTGCAAACATCCAACAGCAAAGACGAGGCGGTGCGGTTAGCGGTGGTGTGTAAGGACGGGCAGCTGCATCTCTTCGAGCACTTTCTCAACGGGCCGTGTAAGAAGCCCCTGTCCCCGGTGTGTTCAGTGCAGGTGTCGAGCGTCGGCTCTGGTGAAGGTGCCACCCCGATGCCCGTCTCCCTGCTGGCTGCCGCTCTGtgttcagacagacagagtgtcATGCTGGCGTACGGGAGCCACTTACAACCCGTCATAGAGAAAACACCCATCAACACATCAGAGAGGCACGTGTGTCTGATCCGAGACGTGCACACGACGCTGTCACTTTCTGTCGACGCAGCCgtcacaaagGTGAAGACGCCCATCGTGAAcgaaaagaaaagcaaagttTTAATACCAGGACTTCCTGGGCATCAAGCGCCAATCAAAGCCActcccagccaatcagagaagaggaagaaaggagTCGTTCCTACAGAGATGTCGATAGAGGAGCGGTTGGAGCAGATTGAGCTGAGCACATCAGGTGGTAAAGGAGAGAGTAAAGGAGCTTCGGCGTCGCTCCAGACGGACAGCTTCGCCGTTCTGCTCGTTCAGGGCCTCGAGAGCAAAGACGAGAAGATCCTCAATAAAATCTTTCAAACAAAGAAGGAAGCCttgattaagaacacagtgGCGCGGTTGCCTCCTCCGGCTGTCCTGCCTCTCGTGGAGGAACTGTCGAGAAGGCTGCAAGGACATCCGTTCACggCGATTCTTATCGTGCAGTGGCTGAAGGCCGTGTTGACGCAGCACACGTCATACTTGTCATcgCTCCCAGACCTGGTGTCTCAGTTGGGGGCGCTCTACCACATGATCGAGAGCCGAGTGAAGCTGTACCAGCAGCTGACGAGACTCCACGGCAAACTCTACCTGCTCATGACGCAGGTGGCGACAAGCAACAGTTCCCACAAAGTAGCCGACCTGGACCGCAAAGCCAAACTGGTGTACGAGGAAGAGTCCTCAGACGAAGATGAAGACTCTAGTGACGAGGGACGGCCTGAGGAAGACTCGGATAGctgggaggaggaagaagaggacgACAAGGAGGAAGGGATGGATGTAACGGAGGACAAAGAAAATCATgcggatgaggaggatgagagcGATGAAGATGGGAAGGACAAGTCCAAAGCAAATGGCGATTCAGACTTAGACCCTGAGAgcgaagaggaatgaaacaatgaaaaaaatagcttggaaaatttatatattatacgtttgttttattttttttttcttcctgttttcattttattgtaaaaaaaaaaaaatcacaaaaagccTGTTTTATAGAGTTCCTACGTGTCATGGACTGCGAGTGGTCGAGTCCCAGGACGGCCACCAGGGCGGCGACATTCACGGGCTCGGAAGTGAACACAGCGGAAATGTTTGTCTCAAAGCCATTTTACTCGTTCTTCCTTTGACCCTTGACCCCAGACTGGCTGCTTTATtcatccctgttttttttttttttttgttttgtttttgttgttgttgtagtaccTATGGTGATGTGGTAGCAGTGTACCACACCTTTAGGATTAATGGTCCAGGCTTTGCTGGTGTATTGCTTCCTTACAAACCATTATACAAAATCTCACAGTTTCAAGGTTACAGTTCTAAAAATACACCCCAAAATGAGGAAtttacttttcactttttcctccatttttgcTACAGTACCGATATCAGAGTTAACAGCAATGCTGATACAATGCTGAAATCCTTGTACTGGTTTTCTGTGAGCTTCTGCTGCTGagttatgcaaaaaaaaataataatcatgacGTGATGGTGAACTTGAGGACAAGTTGTGTCCAGTGTATCACGTTTACAGCATAAAGTACATACCTGATTGGAATATACAGCAAGTCCGTTATCAGACTGATGCATCCCTGCTATACAGggagtttattattttgttcttttctgtaGGGGAAATCTTGGTGTCCCTTTTGCTTGATTGTATGTCCATAAATCAAGTTTAATCAAGAATGGGACGAAACAGGATGTTCGAATCTGCTCCTGAGCAAATAAATTTGAGCTAAATTGGATTTAACTGTAAATTTCCACCCCAAAAACTTCTGATACTGTGaccttctgtctctcactgcaTTTTTAAGTGTGTAACGTTGCAACACAGACTGATGACTGACCCTGACCCCCAGCTTTTTCATGTTCTGTCCATGAATTTAGCCTTTGTTTCCCTGAACCACTcctcatttctttattttgactttttttttttttttttctccttctctgtcctCATCAGCCCTGCAGTGTTGTTGAATCGTATCCGCTTACTCTAATGACGGTTTGAGAGTGGAGGACGATGTGAATGTTGCTCAATTCGGTGAATAATAAAAGTCTCTGAGACCCGCGCTCAGAAAAGTTGGTTGCttcggggggaaaaaaacaatttgtcaAGCGTAACCTTTTTCAATGCAAGCAGTATATATCGACGACTGTTGTAcagttgaaatgaaataaattcctTTTTGTTCTCAGA

Function

symbol description
wdr43 Acts upstream of or within several processes, including blood vessel morphogenesis; embryonic viscerocranium morphogenesis; and hematopoietic stem cell differentiation. Is expressed in brain; gut epithelium; and pharyngeal arch. Orthologous to human WDR43 (WD repeat domain 43).

NR:

description
WD repeat-containing protein 43-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944214.2 True 3358 mRNA 0.50 19 3328678 3345815

Neighbor

gene id symbol gene type direction distance location
cx34.4 LOC108269887,LOC107583143,LOC107715991,LOC107583588,LOC107721793,LOC107670855,LOC103047224,LOC107654883 coding downstream 1286 3322222 ~ 3327392 (-)
cx35.4 LOC108269888,LOC108433331 coding downstream 15820 3308454 ~ 3312858 (-)
dlgap2a dlgap2,LOC107583594,LOC107721130,LOC107715999,LOC107654879,LOC107583025 coding downstream 211041 2952154 ~ 3117637 (-)
cln8 cln8 coding downstream 377045 2944761 ~ 2951633 (-)
arhgef10 arhgef10 coding downstream 391402 2851166 ~ 2937276 (-)
spdya spdya coding upstream 10980 3356795 ~ 3366020 (-)
LOC117598325 NA coding upstream 53748 3399563 ~ 3401992 (-)
stac stac coding upstream 71111 3416926 ~ 3465985 (-)
mtfr1l mtfr1l,LOC107670877,LOC107721073,LOC107654887,LOC107715986 coding upstream 168007 3513822 ~ 3523147 (-)
selenon selenon,sepn1 coding upstream 204798 3550613 ~ 3559452 (-)
LOC113545063 NA non-coding downstream 34926 3291165 ~ 3293752 (-)
G158466 NA non-coding downstream 64666 3263782 ~ 3264012 (-)
G158424 NA non-coding downstream 146810 3181642 ~ 3181868 (-)
G158353 NA non-coding downstream 153287 3175069 ~ 3175391 (-)
G158218 NA non-coding downstream 491828 2836615 ~ 2836850 (-)
G158505 NA non-coding upstream 32839 3378654 ~ 3381823 (-)
LOC117598377 NA non-coding upstream 57484 3403299 ~ 3406430 (-)
G158610 NA non-coding upstream 165866 3511681 ~ 3586557 (-)
G158641 arhgef33 non-coding upstream 242482 3588297 ~ 3589105 (-)
G158649 NA non-coding upstream 290821 3636636 ~ 3636855 (-)
G157723 NA other downstream 1037219 2291022 ~ 2291459 (-)
LOC113547724 LOC108269731 other downstream 1417374 1858555 ~ 1911304 (-)
LOC113547736 hmx1,LOC108269487 other downstream 1722103 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 1921116 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 2783919 514801 ~ 544759 (-)
G158503 NA other upstream 22289 3368104 ~ 3369756 (-)
G158507 NA other upstream 44925 3390740 ~ 3394808 (-)
G158509 NA other upstream 49676 3395491 ~ 3398763 (-)
LOC117598319 NA other upstream 63558 3409373 ~ 3411811 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 1395466 4741281 ~ 4750234 (-)

Expression


Co-expression Network