cx35.4 (LOC108269888,LOC108433331)


Basic Information

Item Value
gene id cx35.4
gene name LOC108269888,LOC108433331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 3308454 ~ 3312858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944189.2
ctcagcttcaggtCGTCCGAAGTCCGAGCATTTTACACCGATTAAGCAAGTGGGGAGTGGAATCATTTCTTTTGAGTGAAAACACACAGGACTGGGATTCAAAATGAAgtTGCATTGAGACCCACCATCAGAAAAATAGATACAGAAAGCTGAAAGAAGAATCAAGTACACAAAAAAGACATAGTAGAAGGAGTGGGACAGAGAGATCAGGTggtgtgaagaaaagaaaaataaaataaaagggaaCTTGAGAGGGATCAGGAGACTAAGAAATCAGAGCTATGGACTGGAAGACATTCCAGGCCCTGCTCAGCGGGGTGAACAAGTACTCGACGGCGTTTGGCCGCATCTGGCTCTCAGTGGTTTTCGTTTTTCGCGTCCTGGTGTACGTGGTGGCGGCAGAGCGAGTATGGGGTGACGAGCAGAAGGACTTTGACTGTAACATCAAGCAGCCAGGCTGCCCCAACGTATGCTACGATCACTTCTTCCCCATCTCGCACATCCGCCTGTGGGCGCTGCAGCTCATTTTCGTCACATGCCCGTCACTCCTTGTGGTCATGCACGTCAAGTATCGGGATGAACGGGAACGCAAGTACCGTGCCAAACACGGCGCCGATGCCAAGCTCTATGACGATACAGGTAAGAAGCATGGTGGCCTCTGGTGGACCTACCTGATCAGTCTCTTTGTCAAGACAGGCATTGAGGTAGCCTTTCTCTACATCCTCCACCACATCTACCATAGCTTTCAGCTGCCGCGAGTCGTCAAGTGCCAAATCTTCCCATGCCCCAATGTGGTGGACTGTTACATCGGCCGGCCCACTGAAAAGAAGATGTTCACCTACTTCATGGTGGGTGCCTCAGCCATCTGCATCGTCCTCAACATCTGTGAGATCTTTTATCTCCTGGCCAAGCGCATCTCAAGCTGTGTCAAGCGGGCGAGGCGTCATCCGCAGAGAGCCGTGCCTCTGTACAGGCCTCCATGTCAGGACCAGGACAGCAACTGCACACTGCCCATGCAAGACCTGGAGCACAAACCACAgtacaagaacaagaacaagctGAGTGTCCCACCTATAGATTACAAGACAAATGTTTTCATGCGGGCTTCAGCTCCTAACCTTAGCTTGGCCTAAATGTGAGATCCACTCGTCTATAGACAGACAACTCAAGAGGGAGAGAGCAATTTTTTCCATGCACTTTGAACACAAACTTTTGGAGCATTTGCAACGGAATCCCATTGCAAATGTTGTTACTGTGTCATGGAGGCAAATGCAGGACTTAAGAAAAAGATTGAGATTTGCCCAGTCTGAGAACCATTTTCATGTCTCAACCTTCTTTTCCTTGCTTTCGCTCATCCACTGCACATAAGGAACTGTCCAGTGCAGTGAAGAATTGACAGATTAATCTCTGGAAGCACTTTATACaaagatccacagctcagatcaAGTCTAAGCAGTCTATCTATGAGCAAACATTTGGATTTACTTTTAAGATTCAGATGAAAATGGGGTTCCAAATGATTTCCATAGATTTGTGTGGTAACTGAAAAACCGAACACACACTAAACAACTAGAGATCACACTGTAGCCAGATTTGATCAAATGTCTTAATCCATACTGACTAGGAGACAGCAGACATGGAGGTCTGGGTGAGTTGGTTCAAAGCTTCTCCActgcagccttttttttctttgtctggtTCTTTGAATTACTGTTGTACAGGCACTTCTTTGTCCTCCATTAAGGATCTCCAGTGCAGCTATGAACACCTGTCtgctgttttttgtgtttgttttgttgtgtttcttcTCTTTTCATTGGCTATTGACttgcctgtcagtcattttttcGCACTTtccatatttttctgtttttacattctttattttcattggATATTCATGTGATTCGTTCAGAAATATGTTGCTAACTCATATACATTACAAGATGAGTTCATTCAGGAAGCAAGAAAGAGTGTAGACAACGGCTAGCAAGGACAGAATTAGCTTGATTGTGCATCTTAGATATGATCCATAAGATAAGTCTTGTGAACCTCGGCTGAAAGGACAAGAACGAAGTAGAAGAAAGGACATTTCCGAACTGCCCCACACCAGCCATGGCAGATAGCGAGGATCTGCTACATGACACTGTAATATCTTTATACACCAGTCTACACCTTTGGACTtctgttgttattttaatgagTTTCATGACGTCATAGGTGTGAAGGAGGATGAATTTCTGAGAAATCTCTCCACAGCTCAGTAGAATgtttcatcacttcatcatttCTAAAAGGAAATCACTGCCAcgtagtaatttttttttacaatgagCAGACAGTTAAATGGAATGTTAAAGTCTTTCAAAGTCTGTTATGGAATAGTTTCTTACTGTCCAAACATTCCTGCCCTCAAATTAGCAGGGAGTGGTGTTGGTAtacatgaaaaggaaaaaaaaaaaaaaaaaatcacttcagaGCTAAC

Function

NR:

description
PREDICTED: gap junction beta-3 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07622 GJB3, CX31; gap junction beta-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944189.2 True 2485 mRNA 0.44 2 3308454 3312858

Neighbor

gene id symbol gene type direction distance location
dlgap2a dlgap2,LOC107583594,LOC107721130,LOC107715999,LOC107654879,LOC107583025 coding downstream 190817 2952154 ~ 3117637 (-)
cln8 cln8 coding downstream 356821 2944761 ~ 2951633 (-)
arhgef10 arhgef10 coding downstream 371178 2851166 ~ 2937276 (-)
LOC113545141 kbtbd11,LOC102794541 coding downstream 462321 2839069 ~ 2846133 (-)
tmem54a NA coding downstream 531768 2762267 ~ 2776686 (-)
cx34.4 LOC108269887,LOC107583143,LOC107715991,LOC107583588,LOC107721793,LOC107670855,LOC103047224,LOC107654883 coding upstream 9364 3322222 ~ 3327392 (-)
wdr43 wdr43,LOC107583586,LOC107583058,LOC107654884 coding upstream 15820 3328678 ~ 3345815 (-)
spdya spdya coding upstream 43937 3356795 ~ 3366020 (-)
LOC117598325 NA coding upstream 86705 3399563 ~ 3401992 (-)
stac stac coding upstream 104068 3416926 ~ 3465985 (-)
LOC113545063 NA non-coding downstream 14702 3291165 ~ 3293752 (-)
G158466 NA non-coding downstream 44442 3263782 ~ 3264012 (-)
G158424 NA non-coding downstream 126586 3181642 ~ 3181868 (-)
G158353 NA non-coding downstream 133063 3175069 ~ 3175391 (-)
G158218 NA non-coding downstream 471604 2836615 ~ 2836850 (-)
G158505 NA non-coding upstream 65796 3378654 ~ 3381823 (-)
LOC117598377 NA non-coding upstream 90441 3403299 ~ 3406430 (-)
G158610 NA non-coding upstream 198823 3511681 ~ 3586557 (-)
G158641 arhgef33 non-coding upstream 275439 3588297 ~ 3589105 (-)
G158649 NA non-coding upstream 323778 3636636 ~ 3636855 (-)
G157723 NA other downstream 1016995 2291022 ~ 2291459 (-)
LOC113547724 LOC108269731 other downstream 1397150 1858555 ~ 1911304 (-)
LOC113547736 hmx1,LOC108269487 other downstream 1701879 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 1900892 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 2763695 514801 ~ 544759 (-)
G158503 NA other upstream 55246 3368104 ~ 3369756 (-)
G158507 NA other upstream 77882 3390740 ~ 3394808 (-)
G158509 NA other upstream 82633 3395491 ~ 3398763 (-)
LOC117598319 NA other upstream 96515 3409373 ~ 3411811 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 1428423 4741281 ~ 4750234 (-)

Expression


Co-expression Network