asap3 (LOC108270084,LOC108438745,LOC107721750)


Basic Information

Item Value
gene id asap3
gene name LOC108270084,LOC108438745,LOC107721750
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 6301534 ~ 6352654 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU189937
ATTTTTAGATccaataattttaataaattttttaagcTACATCAGAAATACACATCCTTTAAGAAAACCAAAGGTGGGTTGGAACTTATTctgaattaaaaataagcaGGAACCATTTCATAGACCAAGggttcataaaatgttttatagaaaatgtttattatatgactatttaaatattacattaggCAAATATGTaatatcatatttatgtatttgagGCAATagtgctttttattcctgaatttttCCACCCATAGAACCCAAATGGTTTGCATTGCTTTAGC
>XM_034308142.1
ACACTTTAACTAGCTATTTTGGTGGTGAAACTGGTTAATGCTCAATATATCCTCAATAGGAAGGTATGTATACGCAGTATATCGCAGACAATAGGCTTTTGTGGCCTCTGTTTTTACCGCGCGCTCTATTTAGCATGGACAACCCAAACATTCCCACGTGACGCTACAACTATTAGCTCACGAGCACGCGCtgctgcaggacagagtaaaAAAAGGACAACACACAGCAGCGGAGAGTGAGACGTGAGGAGCGcgcgcctctctctctctgcgtacTTCTGCTCGCGGATAtgcttctgtttcttcttcttcttcttcttccactgTGGAAATGTTTTCATGAGGATTTAAACAGGTTTCGGACGGGCGCGCGCCTTGCGTGtttgatttgattaaaaaaaaaaaaaacaacaacaacaaaacaaaggtTCGCTGAAGAAAGTTTGGACTCGTGGACTTTGGGGCAGCCATGCCGGAGAAAGTGAGCATCTCAGACTTCGTGTCGCTGGCGAATGAGGACATAACGTCGCCATCCACGTCGTGTTTTCAGGCTAAAATGAGCGACTGCCGGAGCACAGTGACGGGCCTGGAGGAGACTCTGGAGCAGGACCAGAGCTCTCTGCAGAGGATGAAGAAGATGGTGAAGGGCATCCACAGCTCTGGCCTCAGTCATGTGGAGTATAATGAGCAATACATCGAGATTTTGGAGAACCTGGGAAACAGTCATCTATCTCAGGACAATAACGAGATCTCCACAGGGTTCCTTAACCTGGCAGTGTTCACACGGGAGGTCACGGTGCTCCTCAAAACACTGGTGCAGAATCTGAACAgcatcctctcctttcctctggAGAACATCTTGAAAAGCGAACTGAGAGACAGCAGATTGGATCTGAagaaacagatggagagagGTTGGAAGGATTATGACGTTAAAATggGGAAGTTGGAGAGGGAGAGGCAAAAGCAGTACGGTCTGATACGACTGGACTCAGACATAGTGGaggacatggagagagagaggaggactTTCCAGCTGCAGATGTGCGAGtatttgCTGAAGGTTCAGGAGATGAAGATACGACAGGGTCCTGATCTGCTCCAGAGCCTTATCAAGTATTTCCAAGCCCAGCTCAATTTTTTCCAGGATGGACTGAAAGCTGCTGAAAATCTCAGTCCTTTTGTGGAAAAGCTAGCAGCCTCTGTTCACACGgTTCGTCAGGACGAGGATGAGCAGGTGAAGCAGCTCTCTCAGCTCCGTGACTGTCTCAGGAGTCAGTTACAAGTGGAGGGTAAAGAGgatTATCTGAACAGAAAGAATTCCGGTCACGGCTACAGCATCCACCAGCCACAGGGAAACAAGAAATACGGCACAGAGAAATCAGGCTTCCTGCTTAAGAAGAGCGATGGAATCAGGAAAGTGTGGCAGAAGAGGAAATGTGGAGTCAAATATGGCTGTCTGACCATCTCTCACAGCACGATTAACAGACCTCCAGCCAAACTCAACCTCCTCACGTGTCAGGTTCGGCCCAACCCTGAAGAGAAGAGGAATTTTGACCTTGTGACTCATAATCGCACGTATCATTTCCAAGCAGAGGATGAACAAGAATGTATGATctgggtGTCTGTACTCCAGAACAGTAAAGAGGCAGCTCTGAACACGGCTCTGGGAGGAGATCAGCTGCAGTATCCGGGCAGCGGCCTGCAGGATCTGGCGCGTTCTGTAATTTCAGGTCTGAGAAATCTTCCAGGGAACGAGGCCTGCTGTGACTGCGGCGCTCCGGAACCCACCTGGCTCTCCTCTAACCTGGGCATCCTCACCTGTATCGAATGTTCAGGAATCCACCGGGAGCTCGGTGTTCACTACTCACGCATACAGTCGCTCACTCTCGACATGCTGAGTACATCTGAGCTActgCTTGCAGTGAGCATCGGTAACAACAAGTTTAATGACGTCATGGAGGCCAATCTTCGCGATGACTCAGTGAAACCCTTACCGCAGAGTGATATGAATGCGAGGAAGGAGTACATCACAGCGAAGTACGTGGAGAGGCGCTACGTGTTGCATAAAGAGCACTCGGAGCCCCTGCGAGTGTACGATGCTGTGAAGTCGAGAGACCTGACATCCCTCCTGCAGCTGTACGCCGAGGGAGAAGACCTGAGCAAACCCACAGCTGTACCTGATCAACAGGATTTGAAAGAGACGGCTCTCCATGTGGCTGTGCGTTTGGCTGAGAAGAGCTCTCTGGCCCTGGTTGATTTTCTCACACAGAactgTGGCTGTTTGGAGAAGAAGACGTTGGAAGGAAACACAGCTCTTCATTACTGTGCGATGTACAATAAACCAGAATGTCTAAAACTGCTTCTTAAGGGGAAGGCTAGTCTGCACACAGcAAACGCTGCTGGAGAGACTGCGCTGGACATCGCCAAGAGACTGcagcacacacagtgtgtcGACTTGcTGGAGCTGGCTCACAGTGGTAAATTTAACTCCCAGATCCATGTGGAGTACACATGGGAGATGCCACAGGAGTTCCTATACGACAGCGAAGACGATCTGGATGAGAAGGTCAGTCCACCCCGGGGTCTGCGCTCGCCTCTGCCCTCTAATGGCGGCTTTGGGAATTGTCCATGGAGTTGTAACAGCGGCGACCCTGACAGACCGTACCAGAACGTAGACTTTGTTTGCCGCAGCACCTCCTCTGGAGGCCAAACACCTCCTCCCCTTCCTGCTAAATCCATTCAGAGAGGTCGTTCCGACCCGCAAATCAGCACCTCCACCCAGGAGTCTCACCCTGTTTCCCGCCACAGCTCCAGTTCCTGGAGTGGTTCCTATAGAAACAGCCCCCCTTCACCCCTGACAGAGGTCGCAGGGTCACGGGCTCCCCGCTCGCCTCGCAACGGAGTGCTGAAGAGACAGACGGTGGTCTGGGAGTCACAAAGTTCATCAGGGACGCAGAGCTCCATCGGGCCTGTCGTgtctgaGAAGACAACATCGTATCGGCGAACAAATAGTGGAAGTGGGAAGTGTGCAGCAGGTTCTCCCAGCTCTGGAAGCAGCATGGAAGAGCTCTACTGCAGTCTGACCACTAACAgcactgctaatgctaacgctaatgctaatgctaatctcTCAGTGCCCGTCATACTGCCACCACCCCGGTCACGCAAGAACGCCATGagttcAGCGAGGCCTCGGCAGAGAAAGGTTCGGGCGTTAGTGGACTGTATGGGTGTGGGCTCTGACCAGCTGGCCTTCTgtaaaaatgatattattatagTGACTGCTGCTGATGATCCCCACTGGTGGGTTGGGCATGTAGAGGGAAAGCCGTCCAAAAGCGGCTCCTTTCCAGTCAACTACGTTATGAAACTGGGAGAATGATTCTTCCAGAAGCTTCCACCATGCGAGACGAGAGACCACACCCACCGCTTTCACCTGAAAAGTGCTCATCTGTGTCAGCGTGGAACAGCGTGTGCTGCAGTAAAGTGGGTTTAGGGGGGAATTATAGCTACCCATTGTTCCTCAGACTGTATACCACATCAATCGTGGCACTTTAGAGACATTAAATTGCCGTGCGGAGCCGGAGTGAGGCTGGTGTGCGAAGCAGCACTTAGTAAACACATATGAAAACTCATAAAGGTAACAGGAAGCCCTCGGTCTGGAAAGATGGCAGATGATCATCGAAGCACTAAagggaaaataaatgcagtgcATTTCCTGACTGTTCATGCCAAGTCCCCAGGTTTCATTGTTTAATGGATATTTGCTGTTGAGACGCCGATGAGTGGCATCCAGGGGCTGGATAATGAAACACAATCCTCACTGACTGACTTTCAGCCcagtgagggagagacagagacagagacagagaaatggaAAGATGGAGGTATTGTGTTTCCTGTCTTTAACTGGATGCTCTACTTGTCTTTCTGCTGAATCAGCATTCTCTCACTTTAAGACTTCTCCAGTTTGATTTAAACTCACAGCTTGGACAGATAACGTTCTGCGTTCACGTGGAGTCATGTGTTCAACGTGTTTACAAGAAAATTTCACATGAACAGCTCCGTGGATGAGTTCAAGGCTTTAGGGGTCTGCATTTTCTAGATCACAAGGTGTGACACAATGTGgacatttttcaaaatggctAAACCTGGAAGTGTAATACTGATCATACTGAGTCTTTTCTTAATTACGTACCAACAAGTGAGGAAAACGCTGATATTCTAAATCGTTTTATGTGTTCATGGTTATTCTACCTTTACATTCAGATAAAAAATGTTGTAGCTCCATGCTAGCTCACTAAATCAGCACCTCAGTCATTACCAGCTTATTTTATCGTCTATGTCGTTATTCCTAGTTGTAATATTTCCACAGCTTTAACAATGAACATATCACAAAATCACAAGTTCATCATCAGTTCCAGCGAGCTCTTTATGCACAGATTTAGTTATTCAGAAAGTAAAATGCATACAACACAGTCCTTTCCTAATGTTTACAGTAATACCAAGCTCATAAATCTAAAAGATGCACTTACAGGAGCCAACAATCTGTAAATAGTGACAAGTGTTTAGTTGTTGCTTCATGGTCCATCGTTGTAgcgtaatttattttttaaaatcacaaaacaatTTCCAACTCACAAGGCACGATTATTTTAGagcactttcacacctattcTGTTTGTTAAATCTGAATCAGAGCGAAATTAgtactttttgttcatttactgtttggtttggtttcatactgcacataattaaacaaaccaaaaagcaaaaaaaaaacttctaaacctctttcattcatatttaaatacagtaaCAGGAAGAGTTAAAGGTGAAATGTGTGTAGCAATCACAAGAATCACCCGAGCACAGAGAACATGAAGacagcactaaataaatgattatataattatataaacaacaagattaaaacattttgtgtgtaaaattcagagtttattttctcttcttgttCATCAATCTAAATATCTAGAACTcgtggcatttctgcagcactacagctctgtcctttggctcagttagCGCTTCACatctacaaaaacaaaaacgccACGCCGTCATTCGTGGTTCATTTCCTGCAGTCGggtcgattcagagtcaaatcagTTTCTCACTGCAGACAAACCGAGACCGTGTCACTCAGACATGCTCAGACCGGTTGTCTTTGGTTCACACCTGAGTGTGATCAGTGTTTAAAGCTGCATAAAGAACCACACCGAGGTGGAAAAAGCACCAGGGGTCCATTTAAACGGACTGAACACTGCACGTTAATGTTCTCCGTCCAGACTAAGAGCTCTGTTCATGGGAAATGGGACAGTCTGATTGCCACAAAACGGAGGATCAGATTTCTATAGAATGTGTTTGGTAGTAAAACATGGATGGATTTCTCATATTTCATCTTGATTTTAAAGAGCAGTATTTTCCAATTTAGTCAATAATCAAACTCGTAGATGTTCTAAAGACGAGTCAGAACATTCACTTACTGTATTACGTTTGAGGTTGAATCGGTATGttcagtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatggacCCACCCCACTAGCTTTAGTACTGCATTGTGTTCCAGCTGCTCTTGAGATCACTCTGCATTATTGATGACAGGACAGGGGGAGTACAGATGGGTGCACTCCTGCGCTCCACTTAACCACTTCTGTGAAGCAATTAGAGGCCCCCGAGATCCAAAACATTCAGTTCAATTGACTTTttgtttgtaaagaaaaaaaaaaactcgtgGTGCATGAAATGCATTTTCAGTAATGTACATGATATGTAATATTACCTTTAAGAAATGTCCTTCCTTTTTGTGACTGTTTATATCTTACTGTCTCGTTCATTGTTGTTCCATGTTAAGCATTTTTAGATccaataattttaataaattttttaagcTA

Function

NR:

description
arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2

GO: NA

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU189937 False 287 lncRNA 0.27 1 6301534 6301820
XM_034308142.1 True 5964 mRNA 0.46 26 6301782 6352654

Neighbor

gene id symbol gene type direction distance location
nipal3 nipal3,LOC107721898,LOC107668505,LOC107654843,LOC107711811 coding downstream 231474 6057131 ~ 6070060 (-)
rcan3 rcan3,LOC108269498,LOC107721505,LOC107668510 coding downstream 247025 6018832 ~ 6054509 (-)
rlf rlf coding downstream 438677 5847068 ~ 5862857 (-)
LOC113544977 LOC108270284 coding downstream 695748 5585661 ~ 5605786 (-)
LOC113545137 NA coding downstream 719296 5562555 ~ 5582238 (-)
e2f2 e2f2 coding upstream 10507 6363161 ~ 6382620 (-)
id3 id3 coding upstream 40713 6393367 ~ 6394869 (-)
si:ch1073-358c10.1 msra,si:ch1073-358c10.1,LOC107590893,LOC107697700 coding upstream 87767 6440421 ~ 6479814 (-)
ythdf2 ythdf2,LOC107721611,LOC107697702,LOC107654833 coding upstream 152966 6505620 ~ 6517668 (-)
LOC113545117 NA coding upstream 265818 6618472 ~ 6627329 (-)
G160269 NA non-coding downstream 102391 6167200 ~ 6199143 (-)
G160268 NA non-coding downstream 157372 6143897 ~ 6144162 (-)
LOC117598232 NA non-coding downstream 209963 6087221 ~ 6091571 (-)
G160058 NA non-coding downstream 307545 5991920 ~ 5993989 (-)
G160012 NA non-coding downstream 349731 5949126 ~ 5951803 (-)
G160463 NA non-coding upstream 373887 6726541 ~ 6726752 (-)
G160480 NA non-coding upstream 401056 6753710 ~ 6753996 (-)
G161062 NA non-coding upstream 1029753 7382407 ~ 7382623 (-)
G161118 NA non-coding upstream 1249307 7601961 ~ 7602174 (-)
G161239 NA non-coding upstream 1351085 7703739 ~ 7703967 (-)
cnksr1 cnksr1 other downstream 120856 6100665 ~ 6180678 (-)
ncmap NA other downstream 290546 5994040 ~ 6010988 (-)
eno4 eno4 other downstream 565793 5725070 ~ 5735741 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other downstream 1360219 4936094 ~ 4941315 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other downstream 1551300 4741281 ~ 4750234 (-)
G160645 LOC108270426 other upstream 454830 6807484 ~ 6808569 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other upstream 851127 7203781 ~ 7269132 (-)
LOC113545095 NA other upstream 2707829 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 3138563 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 3906795 10259449 ~ 10261465 (-)

Expression


Co-expression Network