LOC113545095


Basic Information

Item Value
gene id LOC113545095
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 9060483 ~ 9065278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC113545095
TTCTCTGCATTCTGACAGTACAATGGCTAGTGACTTCATGTGTGCAGGTCATTCAGGTCCATCAGGAACCAGAGAGCCTGATTCTTTCCCCTGGATCATCTCTGAAGATTTCCTGCTCTATAACTGGTCTGCAGCTCATAGAAGTCCatcagaaaccagaaaacctgaTTCTTTCTCCTGGATCATCGCTGAGGATCTCCTGTGCAATAACTGGTACTGCTAACCCATATCTTTACTGGTACCACTGGAACGAGACAGCAGGCTTCACACTGGTCTTCACCTCTCTAACTACTGGTTCGGTGAATCCAGCCAGTGAGGGCATGCAGATAATACAGGTCCATCAGAAACCAAGGGACCTGGTCCTTGCCACAGGATCATCACTGAAGATTTCCTGCTCTATAACTGGTACTGCTAACCCGTATCTTTACTGGTACAACTGGAACGAGACAGCAGGGTTCACACTGGTCTTCACCTCTGTTGCTACTGGTTCAGTGAATCCACCCAGTGAGGGTCAGTTTAAATCTCGCAGACCTGAACAGCTTCAGATCATTCTGGAGtctgatggagtgagtgagatCGGCTCTGCAGTGTGGTACTGTGCAGCCAGTCCCCACAGCATCCCAATGTCATCACAGAGCTGTACAAAAAGTCATTAAGTTTGAAATTCTCAAATAGACAGTTTTGCATGCATTTCACATTGTCAAGATCACAAGACCTCAACTGAGTGAAGCATGTCTGTAATCAG
>TU192024
ATCACAGAGCTGTACAAAAAGTCATTAAGTTTGAAATTCTCAAATAGACAGTTTTGCATGCATTTCACATTGTCAAGATCACAAGACCTCAACTGAGTGAAGCATGTCTGTAATCAGTGTAGTCTAGTGTTTTCTTAAACAGTGAAGAAACTGTGAAGATTGTAGTCTGAAGTTTGAGAGTGAAAGAGTCAACAGGAAGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC113545095 True 745 V_segment 0.47 4 9060569 9065278
TU192024 False 203 lncRNA 0.36 1 9060483 9060685

Neighbor

gene id symbol gene type direction distance location
LOC117598341 NA coding downstream 675 9057963 ~ 9059808 (-)
LOC117598356 NA coding downstream 192972 8865253 ~ 8867511 (-)
LOC117598359 NA coding downstream 217742 8837517 ~ 8842741 (-)
LOC113545107 LOC108269987,LOC108423399 coding downstream 533536 8330025 ~ 8526947 (-)
LOC113545037 zdhhc14,LOC105897223 coding downstream 734353 8273235 ~ 8326130 (-)
paplna papln,LOC107570257 coding upstream 5085 9070363 ~ 9095460 (-)
psen1 psen1,LOC108269999,LOC108423477 coding upstream 38331 9103609 ~ 9115082 (-)
trappc12 trappc12 coding upstream 59433 9124711 ~ 9150730 (-)
ccr6b LOC108269430 coding upstream 343958 9409236 ~ 9414543 (-)
atp6v1c2 atp6v1c2 coding upstream 353932 9419210 ~ 9428518 (-)
LOC117598368 NA non-coding downstream 142872 8739435 ~ 8917611 (-)
G162068 NA non-coding downstream 145797 8905658 ~ 8914686 (-)
G162067 NA non-coding downstream 147480 8744467 ~ 8913003 (-)
G162049 NA non-coding downstream 303917 8750244 ~ 8756566 (-)
G162041 NA non-coding downstream 316076 8687151 ~ 8744407 (-)
G162187 NA non-coding upstream 145614 9210892 ~ 9211149 (-)
G162268 NA non-coding upstream 276262 9341540 ~ 9341981 (-)
G162279 NA non-coding upstream 330977 9396255 ~ 9396972 (-)
G162497 NA non-coding upstream 484064 9549342 ~ 9549580 (-)
LOC117598277 NA non-coding upstream 521429 9586707 ~ 9588302 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1791351 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 2251914 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2707829 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2879805 6100665 ~ 6180678 (-)
ncmap NA other downstream 3049495 5994040 ~ 6010988 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 425939 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1194171 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1338796 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1406708 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 2133859 11199137 ~ 11216157 (-)

Expression


Co-expression Network