G162049


Basic Information

Item Value
gene id G162049
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 8750244 ~ 8756566 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU191906
ctcgctcactcattgcaaagtcttgttttgccccggctgacatttctgagcgttTATATCTTCTTTGTTGGATTACCGTGTTTGAActtggactgtttcttctcgtttctggattctttgctgcctgccctgaccatctgcctgtttgatcactctgcctttgtttcgcctctgattaccctgtttcgctgttgctcgaccacgcctgtacgactgtgtctgccttttattaaaacgctgctaatggatccccattctgttgactccGCGTTACACAATATTGGAATAATGTGAGCAGTGTGGTTGCTGTGACTTGTGATGTGGTTAAACAGGTGTATGAGACTGTACAGTTGATTAAAGACAGGTTTTTGTTTTGAGGAGAG

Function

GO:

id name namespace
GO:0004518 nuclease activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04120 Ubiquitin mediated proteolysis

RNA

RNA id representative length rna type GC content exon number start site end site
TU191906 True 383 lncRNA 0.45 2 8750244 8756566

Neighbor

gene id symbol gene type direction distance location
LOC113545107 LOC108269987,LOC108423399 coding downstream 223297 8330025 ~ 8526947 (-)
LOC113545037 zdhhc14,LOC105897223 coding downstream 424114 8273235 ~ 8326130 (-)
LOC113545103 LOC108270188 coding downstream 579074 8153983 ~ 8171170 (-)
daam2 daam2 coding downstream 672185 7959349 ~ 8078059 (-)
rbks rbks coding downstream 912949 7799917 ~ 7837295 (-)
LOC117598359 NA coding upstream 80951 8837517 ~ 8842741 (-)
LOC117598356 NA coding upstream 108687 8865253 ~ 8867511 (-)
LOC117598341 NA coding upstream 301397 9057963 ~ 9059808 (-)
paplna papln,LOC107570257 coding upstream 313797 9070363 ~ 9095460 (-)
psen1 psen1,LOC108269999,LOC108423477 coding upstream 347043 9103609 ~ 9115082 (-)
G162041 NA non-coding downstream 5837 8687151 ~ 8744407 (-)
G162048 NA non-coding downstream 28284 8693918 ~ 8721960 (-)
G161724 NA non-coding downstream 170123 8579163 ~ 8580121 (-)
G161587 NA non-coding downstream 421848 8237423 ~ 8328396 (-)
G161600 NA non-coding downstream 470652 8275071 ~ 8279592 (-)
G162068 NA non-coding upstream 149092 8905658 ~ 8914686 (-)
G162187 NA non-coding upstream 454326 9210892 ~ 9211149 (-)
G162268 NA non-coding upstream 584974 9341540 ~ 9341981 (-)
G162279 NA non-coding upstream 639689 9396255 ~ 9396972 (-)
G162497 NA non-coding upstream 792776 9549342 ~ 9549580 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1481112 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 1941675 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2397590 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2569566 6100665 ~ 6180678 (-)
ncmap NA other downstream 2739256 5994040 ~ 6010988 (-)
LOC113545095 NA other upstream 303917 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 734651 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1502883 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1647508 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1715420 10471986 ~ 10479042 (-)

Expression


Co-expression Network