LOC113545107 (LOC108269987,LOC108423399)


Basic Information

Item Value
gene id LOC113545107
gene name LOC108269987,LOC108423399
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 8330025 ~ 8526947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944261.2
GCGGGGAGGTGGATAAGAGCAGCGCGAGCTCCTGTCATGCTGAGCTGCAGAGGTTTGTGCACGGACGCTCACATTTTACTCACAGAGAGACGGAGAAAGTTTCATTTAAAACCCCGGAGCCGAAAACTTTCAGCATGAAGCCGCGCTGACAGCAGCCTCCCCCGGAAACAGCACACTTCCAGCCTCGGATACCAGCAGACGGAGCCGTTCAATCGCAGtgctttttgatcattttgatcCGGTTTACTTTagatattttgcattttgttttcgGGATGTTGCAGTGACCATGGCCGCGCAAGTGGCATCAGTCCCGGCGGCGTCTAATAACAACAAGAGCAAGACTTTATCTGGGGTTTTGGGACAAGATTTAAACTCCGGGAAGCGTGCAGGAGGAATCGGGGACGTGAGAAGCGCgagtaataacaataacaataacactaataatactactactactaataataatgtagaTCGGCGTTGTGATGACCTGAGCCGAACTGGTGGAAGCGTGACAACTTCagtgtcctcctcctcctcttcctcatcatcatcatcttcctcatcatcttcatcttcatcatcatcaatgtCGTCGAGCTCTCCTGGTGCAGAAACGGGTTTTGTGGTTAATCATAAACTAAAGCACGCTCCCGGAGATATTCGGTTTCAGCAGCACAGCAATCAGCGCGCCGTACAGAGGAACCACAGCAGCCAGGACGCCTCCGACCAGCAGAGGTTAGGAGGCAGGGAGAGTGCTGTAGGAGGCAGTTCTGAGCAGCACATGCTGAGAAAAAGTGCTGAAGATCAGCCTTGCAGAGCCGCAGAGCCCATGAGTAGCAGCAGGTACGAGCAAGGCAACTTGGCACCGAGTCTCCAAGCCTCCCATGCCCAGGGcgcaggaggaggaggtggaggaggtggagggaAAACACCAGTCTCTGACTTCAATCACTATTTTGGAAGTTCAAGATCAGGACCTTGCTTCGATCAGCACGGGGCACAGCAGGGCTTTGGCACTCTGATGTATCCCGCCACTTCTAATCATGTGGAAGCCTCTCCAAACTCCCACGAAGGGCAGCAGAAGAGTCAGTACGGCGCTTATGCGGGCTACGGGGCTGCGGGATACAGTAACCCGGCCTCCAGTCAGGCCAAATGCGCCCCGGTTGGGTCCATGAACAACGCCGGGGGGTTTGTACGTTTCCCGGGACAGAGTCAGCATCCTTCCGGCGCGACTCCCACCCTGAACCAGCTGCTCACTTCTCCAGGACCCATGATGCGATACTATGAATACAGCAGCGGAAAAGATGCGAGCTCTCAGTACGGGTGTGGAGGCTCAGGGTGGCCGGGACAGAGAGCTAATCCCGGGGCTGCAAACAGCGCTCAAAGCGCCACCCGGAACCAGGTGGGTTCTATGGACTTCATGGTGATGAAGCGCTCTCAGATGTACGGGATGAGCAGCGGTCCGTActctcagcagcagcagggtGTCCCCTATCCCAGTCAGCCGTACGGATCTCCTTCTACACACAGATACCCGATGGCCATGCAGGGCAGAGGACAAATGAGCATGGGTGCGATGCCATATCCTCAACAACAGGTACCTGCTCACTTTGGCCAGCAGGGCATGGGAGGGTACTGTCCTCAGGGCCAGCCTGGGTACTACAGCCAGTCTCAGCAATCCCAGCAGCCTCAGCAGCAGGCACCCTACAGCCAGCCTCGTACTACCACACAGCAGgAGACTCAGGAGAGCTACGGAAACAGAAGCCAGCCTTCTGGGAATGCTGGGAAACCCAACCATGATGAGATGGGATTGATCCAGCAGGACCGTCCCTCCAGCCTGCCGGACCTGTCAGGCTCCATCGATGACTTGCCCATGGGAACTGAGGCTCCTCTCAATTCAGCCATCAGTGTCTCTGGTCCCTCCAACAGTCAGGGAGACCAGGGTAACCAGACTCAGTCTCCGTTTTCACCACACACCTCTCCTCGTGTATCCAGCATGCGCCCTGGACCCTCGCCTCCACCCGTAGCCTCCCCCAGCCCCGCCGGCTCCAACCAGATCTCCCCTACCAACGGCCCAGGGTCCCAGCTGGCACCACAGACCCCTGGGAACTTATCTGACACTGGCTCCAACTCCAGCATGAACCAGATTCCCATGGCTCAGGACAGAGCCTTTATGAGGAGGAGTCAAAACCAGTATGGTCCTCAGCAGTCAGGACCACCCATGTCCCCACATCTGTCCACCAGGAACCAGATGCAGCATGGGATGAGCGTCTATCAGCAGAACTCCACGAGTTCCTACGGTCCTCCGAGTGGTCCCTACGGCCCACAAGGTAACTACTCGAGACATCCCTATGGAGGAATGACCAACGCTAACTGCAGTGGGCTGGGGTCTGGCATGAGCAACAGCCTGGGCATGAACGCCAGCAGCCCCATGCATGGACAAGGACCAGGGCAACCCATGTCCATGGGCCGTGCCCCTGGACCCCCTGGCAATCGACTCTACCTGAGTGGTGGGAACAGCATGGCACCCACTTCTCCCAGCATGCCACAGTCGGCTGGTCCAGGGATGGGGCCTCCTACAGGAAATGTGAATCGTAAAGCTATAGATGGTCCAATGGCCACAGTGCATCCAACAGGCAACTCTGCACAGGGGAGgcAGGGTGGTTATTGTGGAATGATGGGCACCGGCTCGTCGTATAGCCACCAAGTGGGAAATGCCACAGCGATGATGTCACCACAGAGCTGCAGCTCCACCACGTCTCCTTCAGgCCCCATGGGTGAGGGTGGAGAGGTGGCGATGCCTGCAGACACCAAGCAGAAATCCAGCAGTAAAGAGGAAGTGATTCCTGTTGCTGAGCCTCACAAACCCCCAAAGGATGGCTCCAGCTCTCAGTGCGGCTCGGAACCCCCCACACCCTCAGCCCTTACCCCCAGCCCCGCTAGTCTGTCCTCCTACCACGGGGATGACAGTGACAGCATCAGCAGTCCTGCATGGCCCAAAACTCCCTCCAGTCCAAAGTCAGGCTCTGGCACCACAACGAATGACAAGGTTTCTCGGCTGTACGAAATGGGAAGTGagccagagagaaagagctggGTGGATCGCTATCTGTCCTTCATGGAGGACAGAGGGACACCAGTTCCTCATCTCCCTGTCGTGGGCAAAAAACAGCTGGATCTGTGCAAGTTCTACATGGCTGTAAAGGAGCTAGGTGGCTTGGCCATGgtgaataagaataagaaatgGCGCGAGCTCTCCTCCACGCTCGGTTTAGGCACGTCCAGTAACTCTGCTAGCTCTCTGAAGAAACACTACATCCAGTATCTGTTTGCCTATGAGTGTAAgttggagagaggagaggagccTCCGCCTGACTCCTGCCCTAATGCTGACGGCAAGAAACAAGGCAAGACCGAGCCGCCGTCTCCTGCCACCTCAGGCTCTCTACAGGGCCCTCAAACCCCTCAGTCGACGGGCAGCAGCTCCATGCCTGAGATGCCCGGTGAGCTAAAACCGCCCACGCCAGCCACCACGCCGCAGGGGCACATCAGTATCCCAGGCAACAGCAATAATTCAGTCAGTATTCAAGACCCGTTCTCAGACGGCAGTGATCCTGCGTTCCAAAAAAGGAATATACTGAGCTCTGGAGGCTCTTATCAATCAGCCATGAACCCCATGGACTCCATGATGAGGATGCAGTATGAAAATAAGGACCATTTTGCAGGAATGAGGAaagCGGTAGGTGGAGAACCATGCATGCCAGCTCAGATGACCCCTGCTGGCATGCAGGACATCTATGGCAGGAGTCCCTCGAGTGGCCCCATGGCAGGACTTGGTATGGGTCAGCGTTCTCAGTACCCTTATGGACCAGGATATGACCGCAGATCAGACCATTTAATGGGGATGGATGGGAGTATGGGTCCCCATGGAAATCAAGGCAGCATGAGTCATGCCAACAATGACGGTAGCATGTACTCTCCTAACAGATACCATAATCAACAAAGACATGATGGCTATGGACAGCAGTATCCTGGTATGCCATATGGTGTCCACCCTCCAGGGATGTACCCTCAACAGGGCTACAAGCGACCCCTAGATGGAATGTACAGCCCCCCTGCTAAGAGGCATGAAGGAGAGGTTTATGGGATGCAGTACGGAGGCCCACAGACAGACATGTATGGTCAGTACGGAGGAAATTATCCAGAGCGCCGACCCATGCAGACTCCCTTTCCTTATCCATATAGCCGGGAACGGCTACAGAACACCAGCCAGGGGCCTCAGCATCATCCTGTTCAACACAGCATGATGGGTGCTGGACATTCAGTGCCCACAGGAGATGGCCCAACACACATGTGGCCCTCAAGGACAGACATGTCCTATTCTTACTCTAACAGACACGGGACACCTAGTCAGAGCTCTCCATACCCAGGGATGGGACGCATAGATGACATGGATGGAGTCAGAGCAGACAATCAGTGGCCCGGGCATCAGCGCCAAACACCATACATATCTGGTCACTCTAACTCCATGGGTCTTCTGAATTCACGGCCTCCATCTTCCTACCAGACCTCTAACCACATCTCCTGTGAACCAAGCCCAGGGTCTTTTCAGCGCTCTATGGAAGCACACATGCAACCCAACAAGATGGCCTTTATGCAGTCTATGAAGATGCACAAGCCCGGAATGCCAGTGCCAAGTGGCTCGGGGAGTGGAGTCCCAGGTCAGATGCCACCCAACATGAGGAGAGACTATCCAATGGGGTGTGTGGAAGGGACCCAACCTCTCCCGAAACCTCGACGCAAAATGACCTCAAAAGACACTGGAACCCCAGAAGCCTGGCGAGTGATGATGTCACTCAAGTCAGGTCTTCTGGCAGAAAGCACATGGGCTCTGGATACAATCAACATCCTCCTTTATGATGACAGCACTGTAGCATCATTCAACCTGGCTCAGTTGCCTGGATTCCTAGAGCTCATCGTAGAGTATTTAAGAAGATGCTTGATTGAGATCTTTGGCATCTTGGAGGAATATGAGGTGGGGACTCTCGGCCAGAAGACTCTGCTTGGTCCAGCTGAGGATGAAAGAGAGCAGGACTTGCTCAAATCAGACATCCCTTATGAGCCAGAGTCCAGCCAAGAACCAGAGAAAAACTCCATGGACTCTCTACCTGGGTCTtctgagacagacacagagttAATTCAGGAAGGTCAGAACAAGAATGAGATATTCAAAAATGAGACAGAGGAGAAAGATGAACAGAGAACTGAGGATATTAATGAGCCTGTTGAGAGCCATTCGTCAACAATGCCCGAACCAAGACCCAAACAGGCCAGCAAGTATGATAAGCTGCCTGTCAAGATTGTTCCCAAAGATGACTTTATCAGGGATATTTCTGATGAGCTTGGCCATGTGCAGAAGTTTGACAGTGGACTGCTTCACTGGAAAGCAGGTGGTGGGGACTCCACAAGCTACATCTTAACACATTTTGACAGCCATGAGGAGTGTGCTAATAATAGTGTCCAGAGCAAACAACACTGCTGTGCTTTAAAATCAGAGGAGGTACATAACAACCAAGTTGCAACTATAGATGATGTGCTGTCCCCAAGATTGAGAGCTCTCTCTGAGGAAGAAAACTCATCAGCCTCCTTGAGCAATTCCTCATACTCATTACGCCTTTTTGAGAACCAGAAAGGGATCACTCTACTGGAGGATGAACCTCACTGTCCAGATGAACCTCCACTGTGCACAAAATCCAGCTGGCAGGACTCTTTGACCAAACGCTGCATATGTGTCTCCAATATCATTCGCAGCCTGTCGTTCATCCCTGGAAATGATACTGAGATGTCCAAGCATGCAGGCCTGATTCTGATCCTTGGCCGATTGCTGCTGTTGCACCATGAGCACCCAGAGAGGAAGAGAACCGTCCCTAGCTACGACAAAGATGAGTACCATAAGGAGGAAGAAATCAAGCCCTGCAGCAGGGATGAGTGGTGGTGGGACTGTCTGGCAGCACTGAGGGAGAACACTTTGGTCACATTAGCCAACATTGCGGGGCAGCTAGACCTGTCAGTCTACCCAGAGAGTATCTGCCTTCCCATCCTTGATGGCCTGCTCCACTGGATGGTGTGTCCTTCGGCTGAGGCCCAGGACCCGTTTCCTTCAGCAGGGCCACATTCACTGCTCAGCCCAAGAAGATTAGTGCTGGAATGTCTGTGCAAGCTCAGCGTTCAAGACGGCAACGTAGACTTGATCCTGGCCACACCTCCCTTTAGTCGTCAGGAGAAGTTCTTTGCCACACTGGTGCGTCATGTGGGAGAGCGAAAACTGCAAGTTTACCGCGAGATGGCAGTGGCCGTGCTGTCCAACCTGGCTAGAGGGGATTCTTCAGCGGCACGTGGCATCGCCATTCAGAGAAACAGTGTTGGCAACCTCGTAGGCTTCCTAGAGGATGGAATTGCCATGACTCAGTATCACCAAAACCCACACAGTCTGCTGCACATGGGTCATCCTCCCATGGAGCAACCCAGTGTGAGCATGATGTGTCGAGCTGCGAAGGCGCTGCTGGAACTGGCCAAAGTGGAGGAGAACAGGCCTGAGTTTGTGCTGTATGAAAGCAGACTACTGGATATTGCCATCTCCTCCGTGCTTAATGTAAGTGTGGTGGCCATCATCTGTGACGTACTCTTTCACCTCGGCAAGTCATGACAAAAGGTGGAACGCCTTTAAAACTGTATTACACCAATCATGCGGATGAGGcactttcatatttatatttaaaatcaaagttgctttatatatgaatatatgaaataaatcaatatgaaCAGCTTCTGTGTCCAACTCTTTTCGTTTGAGGGTTttagaaaatgattttaatacagatatttaatattgttgttTGAATGTTTGTCTCTtgcttatttcatttttattttaataaccaAATGTCTGACTTTTGGTTCAGAAGATTTACgattatctttttttcccccctctctttATAAACTTTTGGAAATTTTCTAAGTGTACATAATCTGTATCtgtggatttgtttttaaaagcagaATTATTTAAGATCTGAGAATACTGTAGATAGTAGCTTCTGTTTGATATTTGCTATGATAAACTTGCTTTTACCCATTCTGTTATATCCACATCTGGAAAATTAATTGTGCAATATTATGGTGCAAGTTGCCTGCTGAAGGCAAGAGAGATGTGATTTCTTTCCCATATCTATCATGCAAATAACATGCTTCACCATGAGGCGGCAGCATTGtatcagttatttaaaaaaaacatcatcttgGACTGCAAATATTCGTTTGCCTCCTTGGTGTTATATCAATTGCTATATTTAACAATGGAAGTATGTATTTAGGACTTGCTTTACCTTACTTCCATTTTGAACCCCAAGACAGTGCTGTATATAGACCATGCTGtactcttttctttgttttgttttttgtttttttttttttttttttttttttttccagaaatgtgGTAACTACAAAGTGATTGTAGTTTGTAAAGATGAAATTATTGTTCTTGTTGTTACATCTATGATAACTATTGGTATTTTGTAAATGAGGTCCAGTTTTGGATTGAGGGTAGtgaatgtgttctgtcagtatAACCTTTCTGTATGCGCTCTTTAATAGCTGACCTCTGATCAGACTTTGGTAATCACACGTCGAAGTGCCATGGTCAGCTCATCACATGCTAAGATTACATGAAAATAGACAGCTAATGcaagatctgtttttttttaatga

Function

GO: NA

KEGG:

id description
K11653 ARID1; AT-rich interactive domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944261.2 True 7779 mRNA 0.51 21 8330025 8526947

Neighbor

gene id symbol gene type direction distance location
LOC113545037 zdhhc14,LOC105897223 coding downstream 3895 8273235 ~ 8326130 (-)
LOC113545103 LOC108270188 coding downstream 158855 8153983 ~ 8171170 (-)
daam2 daam2 coding downstream 251966 7959349 ~ 8078059 (-)
rbks rbks coding downstream 492730 7799917 ~ 7837295 (-)
si:dkey-16j16.4 LOC108270219,LOC108423460 coding downstream 553101 7747811 ~ 7776924 (-)
LOC117598359 NA coding upstream 310570 8837517 ~ 8842741 (-)
LOC117598356 NA coding upstream 338306 8865253 ~ 8867511 (-)
LOC117598341 NA coding upstream 531016 9057963 ~ 9059808 (-)
paplna papln,LOC107570257 coding upstream 543416 9070363 ~ 9095460 (-)
psen1 psen1,LOC108269999,LOC108423477 coding upstream 576662 9103609 ~ 9115082 (-)
G161587 NA non-coding downstream 1629 8237423 ~ 8328396 (-)
G161600 NA non-coding downstream 50433 8275071 ~ 8279592 (-)
G161389 NA non-coding downstream 151197 8178609 ~ 8178828 (-)
G161363 NA non-coding downstream 248361 8046437 ~ 8081664 (-)
G161347 NA non-coding downstream 313834 8014759 ~ 8016191 (-)
G161724 NA non-coding upstream 52216 8579163 ~ 8580121 (-)
G162041 NA non-coding upstream 160204 8687151 ~ 8744407 (-)
G162048 NA non-coding upstream 166971 8693918 ~ 8721960 (-)
LOC117598368 NA non-coding upstream 212488 8739435 ~ 8917611 (-)
G162067 NA non-coding upstream 217520 8744467 ~ 8913003 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1060893 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 1521456 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 1977371 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2149347 6100665 ~ 6180678 (-)
ncmap NA other downstream 2319037 5994040 ~ 6010988 (-)
LOC113545095 NA other upstream 533536 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 964270 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1732502 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1877127 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1945039 10471986 ~ 10479042 (-)

Expression


Co-expression Network