G160645 (LOC108270426)


Basic Information

Item Value
gene id G160645
gene name LOC108270426
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 6807484 ~ 6808569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU190339
GTCGGGCGTCTGATGCCCGGATGGCGGTTGAGTACCTCTCCTCCTTGCCCGGAACTTGAGCCTTGCGCTCTGGCATAAGTCGCACGCGCAGCCGGCCTCCTTCGGCCCCGAGCCACCACTCCAGCACGCGCGTCAGGTCCATTTCCAAAAAGGGCACAGGCGCGTCCTCGCGCACAACCAACCCGCCACATCCGGTCTTCACCATGTCCTCTCCCACCTCCACCACGACCTGGTTGGACTTGCGGCTCGCTGTGCTCAAACCCAAACTCAGCACTTTGGGGGCGGGCCGGGTGCGCCTGTACGGCAGTTGTTCGCCACCGGAGCCGTTCCCGCCCTCCCCCCGCACGATTTCTGCCAACTTCGCGCCGAGCAAACTCGCGATGGTCTTCTGCAAAGGCGCGCAGTGCATCCGCAGGTTGGCGCGCACCGTGTAGCAGCCGGCGTGTGTCAGGCAGTCCCCGTTCAGCGGGCGCTTTATGAACATCGCCATGTAGTACCGCAAAAGAGACGGCACCGCAAAATCAACCGACAGCGTCTTCCTCTTCAGCCTGGAGCTGAAGGTCTGATTGGAGTCCCGTTTGCCACTCGCATCCAGCGTGCTGTTGACGGGGACAGTAGGTGCGCTCGCGCCCTGCAGCCCGGTCACGCATGCCGCAGAGCAGAGGAGAAAGCACAGCATCCTCGGCGTCATGCTGGAGCTCGGTCTGGATGAACCTTGTTCCGTAGTTAGTCGAGCTTCTTTCCCTCGTCCTCACTCCTTCTCCATGTACAGCAGAGTCGAAATGCTCATGCACACTCCGGATCTGTCCTCGTGCGCTTTCACCGCTCGCATCACGCACGAGCCCTGCTTAAATCTCTCACCGCATCCTCCTCGTCAGAGAAAAAGTGCCTTAAACGGTCTCCTGTGCAATCCAAACTGGCCCCCAGTGTTTCAGCTCGTGCACTGCTGCTCGGTATGCCGAACAGCTCTTCCTCCCGAGCTCGCTCAAAAGCTCccttgtatgtatgtatgtgcacGCAACACCGTAGAGGCAAAAACGCTTCTGCTCAGCAAACACTCCTGCACGCGCAACGTCGCTGTCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190339 True 1086 TUCP 0.60 1 6807484 6808569

Neighbor

gene id symbol gene type direction distance location
slc39a9 slc39a9,LOC107731991 coding downstream 51671 6744902 ~ 6755813 (-)
plekhd1 plekhd1 coding downstream 64918 6727563 ~ 6742566 (-)
smoc1 smoc1 coding downstream 99957 6649979 ~ 6707527 (-)
LOC113545082 LOC108269854,LOC107600659,LOC107664420,LOC108423421,LOC105893120,LOC100334818 coding downstream 164906 6635832 ~ 6642578 (-)
LOC113545117 NA coding downstream 180155 6618472 ~ 6627329 (-)
LOC113544987 lrfn2,LOC107754970,LOC107703608 coding upstream 542886 7351455 ~ 7460776 (-)
supt7l supt7l,LOC107737450,LOC107553729,LOC107726086,LOC107656753,LOC107697525 coding upstream 918382 7726951 ~ 7731027 (-)
si:dkey-16j16.4 LOC108270219,LOC108423460 coding upstream 939242 7747811 ~ 7776924 (-)
rbks rbks coding upstream 991348 7799917 ~ 7837295 (-)
daam2 daam2 coding upstream 1150780 7959349 ~ 8078059 (-)
G160480 NA non-coding downstream 53488 6753710 ~ 6753996 (-)
G160463 NA non-coding downstream 80732 6726541 ~ 6726752 (-)
G160269 NA non-coding downstream 608341 6167200 ~ 6199143 (-)
G160268 NA non-coding downstream 663322 6143897 ~ 6144162 (-)
LOC117598232 NA non-coding downstream 715913 6087221 ~ 6091571 (-)
G161062 NA non-coding upstream 573838 7382407 ~ 7382623 (-)
G161118 NA non-coding upstream 793392 7601961 ~ 7602174 (-)
G161239 NA non-coding upstream 895170 7703739 ~ 7703967 (-)
G161337 NA non-coding upstream 1144499 7953068 ~ 7953637 (-)
G161347 NA non-coding upstream 1206190 8014759 ~ 8016191 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 454830 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 626806 6100665 ~ 6180678 (-)
ncmap NA other downstream 796496 5994040 ~ 6010988 (-)
eno4 eno4 other downstream 1071743 5725070 ~ 5735741 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other downstream 1866169 4936094 ~ 4941315 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other upstream 395212 7203781 ~ 7269132 (-)
LOC113545095 NA other upstream 2251914 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 2682648 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 3450880 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 3595505 10404074 ~ 10417586 (-)

Expression


Co-expression Network