G161239


Basic Information

Item Value
gene id G161239
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 7703739 ~ 7703967 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU190964
cagtgtaaacccatatgaggatgggttctctgttgagcctggttcctctcaaggtttcttcctatcaccatctcagggagtttttccttgccaccgtcgccctgcttgctcatcagagacgtcacacacacacttcactttacttttgtttgtgtaaagctgctttgagacaatgacctttgtaaaaagcgctatacaaataaaaatgaattgaattgaattgaattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190964 True 229 lncRNA 0.41 1 7703739 7703967

Neighbor

gene id symbol gene type direction distance location
LOC113544987 lrfn2,LOC107754970,LOC107703608 coding downstream 242963 7351455 ~ 7460776 (-)
slc39a9 slc39a9,LOC107731991 coding downstream 947926 6744902 ~ 6755813 (-)
plekhd1 plekhd1 coding downstream 961173 6727563 ~ 6742566 (-)
smoc1 smoc1 coding downstream 996212 6649979 ~ 6707527 (-)
LOC113545082 LOC108269854,LOC107600659,LOC107664420,LOC108423421,LOC105893120,LOC100334818 coding downstream 1061161 6635832 ~ 6642578 (-)
supt7l supt7l,LOC107737450,LOC107553729,LOC107726086,LOC107656753,LOC107697525 coding upstream 22984 7726951 ~ 7731027 (-)
si:dkey-16j16.4 LOC108270219,LOC108423460 coding upstream 43844 7747811 ~ 7776924 (-)
rbks rbks coding upstream 95950 7799917 ~ 7837295 (-)
daam2 daam2 coding upstream 255382 7959349 ~ 8078059 (-)
LOC113545103 LOC108270188 coding upstream 450016 8153983 ~ 8171170 (-)
G161118 NA non-coding downstream 101565 7601961 ~ 7602174 (-)
G161062 NA non-coding downstream 321116 7382407 ~ 7382623 (-)
G160480 NA non-coding downstream 949743 6753710 ~ 6753996 (-)
G160463 NA non-coding downstream 976987 6726541 ~ 6726752 (-)
G160269 NA non-coding downstream 1504596 6167200 ~ 6199143 (-)
G161337 NA non-coding upstream 249101 7953068 ~ 7953637 (-)
G161347 NA non-coding upstream 310792 8014759 ~ 8016191 (-)
G161363 NA non-coding upstream 342470 8046437 ~ 8081664 (-)
G161389 NA non-coding upstream 474642 8178609 ~ 8178828 (-)
G161587 NA non-coding upstream 533456 8237423 ~ 8328396 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 434607 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 895170 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 1351085 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 1523061 6100665 ~ 6180678 (-)
ncmap NA other downstream 1692751 5994040 ~ 6010988 (-)
LOC113545095 NA other upstream 1356516 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 1787250 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 2555482 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 2700107 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 2768019 10471986 ~ 10479042 (-)

Expression


Co-expression Network