LOC113538721 (prima1,LOC108270468,LOC108423434)


Basic Information

Item Value
gene id LOC113538721
gene name prima1,LOC108270468,LOC108423434
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10404074 ~ 10417586 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU192936
gatCAAAAAGGCTCTTGTGCGCACGAGCCGCGCCTCATGAACTTTACGCGAGCATCTCCCTGATTTCCAACTTGTTTTCGTCGGTCATCAGGGCACTTAACCCGGAATGGCCTTTTTTCAGGATTTGGGACGTGAAACGTGATTTAGAAAAGACCAATGCGTAGCTCGTGCGGATTGCGCGGAGGGGAATACATCCACCTAGTGCATCTGACCACTCGCCTCGACTGCCTCATGCACATTTACTCACACTACACATGCAAGAAAGAAATCGCGAAGATGCTGAGGAGCGACACGCGCTTCGACCAGCAAGCAGACGCACATGAAGCGGAGATGAACCTGCGACTTGCATGGATAGGATGATTGACGTTCAACTCCGGAAAGTTTCTAGGGAAGACATTGccaaattgtaaaaaaaaaaaaaaaagtattatgtcTTTCTTGAATCCTGCATTCGTGTGGATGCCCTTGGCATGAAGTGCTCAGGTGTCCTCTGGTTCCTGTAACGTTACTCCACCAGGCGCATCGCCATCAGTCCAGTTCTATGCGCCCTCCGCCTGCTCACACACCGATCTGTTTATGAGCCGAGAGAAGGAGGGATGCATAGTCGAGACAGAACACCTTTCAGATCAAGGCTTCGGCCATTTCTATTAGGCCACTGCTTTTTCTCGTCGTTTCTTCTTTTATGCCAGGCTGAGCTTCAGAGGTCATGCTCACAGCTTGGCTCTCAGAGACGAGGTGGACACTGCCAGTCACTGTGCCACTGCAGATACTACCCACCTctacctcctccacctccacctccacccccTCCTCGGCTTCTCATCCCCAAAGTGGTTGAGCCTCCAGTTCCTCTGCTAAGGCCGTGGTGGATGGACTTCATTGTGGTTGTGACAGTAGGATGCACTTCGGCTTTCTTTCTACTCTTAATTCTTCTCATCTACTACAAGGCCATTAAACGGAAACCTcttaaaaaagaggaaaatggcACTAGTCGTGGAGAATATGCCATGAGCTGCCGCAAGAAAAAGACCACTAATAACATTGTACtgtaaaacagacacacataaaGAGCTAATGATGTCTCTGCATTGCTGCATCCTCAGCACTTACTGACCCAATGTGCAGCAGAAGTGCTAACCCAAATGTACGTCCGATGTCAAAGCAGAGAATGGAGAACAAGAACAAGATTAACTTGTTGGAAGACTGCAGCCTGGGCTGTTACACTACTGCTCTGCACTCTCAGAGTGCACTCTCCCACTCCCATGCACTAGCAAACTGTGGCATAGAGACTATGACGTatatatttgcatgattttttttaattttagtgccattatatcaatatataataCCAGatgctttattttacatttgatgTAAATAATCTAATTTCTCAATCTCAAAGCTAATTTCTAAGCATagcattttctatttatttaataaattatgattatttattttgtcaacATTGCTGTGGGACACTGCATGTCTTCTGATGaggagatgtttaaaaaaaaagacatggctGTGTTGTTCAGCTGTGTCTTAGGGAAATTTAACAAATGAGTTTGCATGGTATATTGTGCACACCTAACTGAAATACACCTTGTAGAAATTTTGTACTCAAACTATCATATGTTCAAAAGATTGGTTACCTTGCACCGTCAAGGCTGTGGCTTCATATTTGTGCTGTATTTCTAAATGTTAATGTGATATAACATTGAGACAAGCCTATGCACAGATACTTACACAACATGTTACATCATTCTAGGATGAACCCTGGAGGTCTTTCCTGGTGTTCTGCATTATTTCTGTGGTATAGCGTGGTTTCATATTTGCAAAGAGACTAAGATGCTGGTCTTGTATCCTCCTTAAGGCTAGATTTCTAAACACTCCCTTGTCTTTACAAAATTCTAGTGATTACAAGGACAGTGGACAATCATGCAGGAggcactttgtcatgttcagaTGTAATTACGTGCTAATTGTTCCCTTCACAATCCACCACACAAGGGCCTTTCCACAAAAGTCTACAGAGATGTCTGATGAACATTAGCACTTCACTGATGAAGGATCGTAAGAAAGACGGCGGTATTTCCCGTGCCGTAAACTTCATGTAGGCTGTCATCAGAAAGATAATGAATGTCTGTAATGTTGCTGATGTTATAATGACAGTATAATAAGTATCATGttatatattaatgaaaaatacattaacATAGAGCGTCAAACGTTGGGATATGCATTACAGTTGGTTCGTTTCAGTGGTTGAAACATCATGTTCTGTGTCTGagtgctgtctctgtctgtctaactaCAATTGTGAAGTTTGGTCTCATCTGAATTGTATCCTAGAAAATCTCAAACAACTATATGTaagatatataaaatgtattatatgtaCAAATGAGAGGGAATGATGCATGAATGTAAACAATGATTTCAAGTTACTGTACCTTCTGGACTGTTATTCACTCATCCAGAGTGactaaatatgtttatacataGTAGAAATAAAACC
>XM_026934022.2
tgcgtgcgtgtgcgcgcgcgcgtgatCAAAAAGGCTCTTGTGCGCACGAGCCGCGCCTCATGAACTTTACGCGAGCATCTCCCTGATTTCCAACTTGTTTTCGTCGGTCATCAGGGCACTTAACCCGGAATGGCCTTTTTTCAGGATTTGGGACGTGAAACGTGATTTAGAAAAGACCAATGCGTAGCTCGTGCGGATTGCGCGGAGGGGAATACATCCACCTAGTGCATCTGACCACTCGCCTCGACTGCCTCATGCACATTTACTCACACTACACATGCAAGAAAGAAATCGCGAAGATGCTGAGGAGCGACACGCGCTTCGACCAGCAAGCAGACGCACATGAAGCGGAGATGAACCTGCGACTTGCATGGATAGGATGATTGACGTTCAACTCCGGAAAGTTTCTAGGGAAGACATTGccaaattgtaaaaaaaaaaaaaaaagtattatgtcTTTCTTGAATCCTGCATTCGTGTGGATGCCCTTGGCATGAAGTGCTCAGGTGTCCTCTGGTTCCTGTAACGTTACTCCACCAGGCGCATCGCCATCAGTCCAGTTCTATGCGCCCTCCGCCTGCTCACACACCGATCTGTTTATGAGCCGAGAGAAGGAGGGATGCATAGTCGAGACAGAACACCTTTCAGATCAAGGCTTCGGCCATTTCTATTAGGCCACTGCTTTTTCTCGTCGTTTCTTCTTTTATGCCAGGCTGAGCTTCAGAGGTCATGCTCACAGCTTGGCTCTCAGAGACGAGGTGGACACTGCCAGTCACTGTGCCACTGCAGATACTACCCACCTctacctcctccacctccacctccacccccTCCTCGGCTTCTCATCCCCAAAGTGGTTGAGCCTCCAGTTCCTCTGCTAAGGCCGTGGTGGATGGACTTCATTGTGGTTGTGACAGTAGGATGCACTTCGGCTTTCTTTCTACTCTTAATTCTTCTCATCTACTACAAGGCCATTAAACGtgattggcagtttGATACAAGGTACAGCCCCTTTGAGAGGTCTCCCAATCATCATACGGAGATGGACCAGACAAGCAAAGAGCTCATTGTCCAATAaacattgagattttttttttcctgaatgaatgaataagcaGCACGATATTACAGTGagGAAACCTcttaaaaaagaggaaaatggcACTAGTCGTGGAGAATATGCCATGAGCTGCCGCAAGAAAAAGACCACTAATAACATTGTACtgtaaaacagacacacataaaGAGC
>XM_026934023.2
gtgtgcgcgcgcgcgtgatCAAAAAGGCTCTTGTGCGCACGAGCCGCGCCTCATGAACTTTACGCGAGCATCTCCCTGATTTCCAACTTGTTTTCGTCGGTCATCAGGGCACTTAACCCGGAATGGCCTTTTTTCAGGATTTGGGACGTGAAACGTGATTTAGAAAAGACCAATGCGTAGCTCGTGCGGATTGCGCGGAGGGGAATACATCCACCTAGTGCATCTGACCACTCGCCTCGACTGCCTCATGCACATTTACTCACACTACACATGCAAGAAAGAAATCGCGAAGATGCTGAGGAGCGACACGCGCTTCGACCAGCAAGCAGACGCACATGAAGCGGAGATGAACCTGCGACTTGCATGGATAGGATGATTGACGTTCAACTCCGGAAAGTTTCTAGGGAAGACATTGccaaattgtaaaaaaaaaaaaaaaagtattatgtcTTTCTTGAATCCTGCATTCGTGTGGATGCCCTTGGCATGAAGTGCTCAGGTGTCCTCTGGTTCCTGTAACGTTACTCCACCAGGCGCATCGCCATCAGTCCAGTTCTATGCGCCCTCCGCCTGCTCACACACCGATCTGTTTATGAGCCGAGAGAAGGAGGGATGCATAGTCGAGACAGAACACCTTTCAGATCAAGGCTTCGGCCATTTCTATTAGGCCACTGCTTTTTCTCGTCGTTTCTTCTTTTATGCCAGGCTGAGCTTCAGAGGTCATGCTCACAGCTTGGCTCTCAGAGACGAGGTGGACACTGCCAGTCACTGTGCCACTGCAGATACTACCCACCTctacctcctccacctccacctccacccccTCCTCGGCTTCTCATCCCCAAAGTGGTTGAGCCTCCAGTTCCTCTGCTAAGGCCGTGGTGGATGGACTTCATTGTGGTTGTGACAGTAGGATGCACTTCGGCTTTCTTTCTACTCTTAATTCTTCTCATCTACTACAAGGCCATTAAACGGAAACCTcttaaaaaagaggaaaatggcACTAGTCGTGGAGAATATGCCATGAGCTGCCGCAAGAAAAAGACCACTAATAACATTGTACtgtaaaacagacacacataaaGAGCTAATGATGTCTCTGCATTGCTGCATCCTCAGCACTTACTGACCCAATGTGCAGCAGAAGTGCTAACCCAAATGTACGTCCGATGTCAAAGCAGAGAATGGAGAACAAGAACAAGATTAACTTGTTGGAAGACTGCAGCCTGGGCTGTTACACTACTGCTCTGCACTCTCAGAGTGCACTCTCCCACTCCCATGCACTAGCAAACTGTGGCATAGAGACTATGACGTatatatttgcatgattttttttaattttagtgccattatatcaatatataataCCAGatgctttattttacatttgatgTAAATAATCTAATTTCTCAATCTCAAAGCTAATTTCTAAGCATagcattttctatttatttaataaattatgattatttattttgtcaacATTGCTGTGGGACACTGCATGTCTTCTGATGaggagatgtttaaaaaaaaagacatggctGTGTTGTTCAGCTGTGTCTTAGGGAAATTTAACAAATGAGTTTGCATGGTATATTGTGCACACCTAACTGAAATACACCTTGTAGAAATTTTGTACTCAAACTATCATATGTTCAAAAGATTGGTTACCTTGCACCGTCAAGGCTGTGGCTTCATATTTGTGCTGTATTTCTAAATGTTAATGTGATATAACATTGAGACAAGCCTATGCACAGATACTTACACAACATGTTACATCATTCTAGGATGAACCCTGGAGGTCTTTCCTGGTGTTCTGCATTATTTCTGTGGTATAGCGTGGTTTCATATTTGCAAAGAGACTAAGATGCTGGTCTTGTATCCTCCTTAAGGCTAGATTTCTAAACACTCCCTTGTCTTTACAAAATTCTAGTGATTACAAGGACAGTGGACAATCATGCAGGAggcactttgtcatgttcagaTGTAATTACGTGCTAATTGTTCCCTTCACAATCCACCACACAAGGGCCTTTCCACAAAAGTCTACAGAGATGTCTGATGAACATTAGCACTTCACTGATGAAGGATCGTAAGAAAGACGGCGGTATTTCCCGTGCCGTAAACTTCATGTAGGCTGTCATCAGAAAGATAATGAATGTCTGTAATGTTGCTGATGTTATAATGACAGTATAATAAGTATCATGttatatattaatgaaaaatacattaacATAGAGCGTCAAACGTTGGGATATGCATTACAGTTGGTTCGTTTCAGTGGTTGAAACATCATGTTCTGTGTCTGagtgctgtctctgtctgtctaactaCAATTGTGAAGTTTGGTCTCATCTGAATTGTATCCTAGAAAATCTCAAACAACTATATGTaagatatataaaatgtattatatgtaCAAATGAGAGGGAATGATGCATGAATGTAAACAATGATTTCAAGTTACTGTACCTTCTGGACTGTTATTCACTCATCCAGAGTGactaaatatgtttatacataGTAGAAATAAAACCATGCAAACAGA
>XM_034307800.1
aaaataaataaataaaggcataCAATATAATTGCTACTGCTATTATAAGTTTCAGTGGCTTACAATCATGTACAAGTGATATATATTTGATTAAAAGCTAATTTCAGATCAAAACCAATTAAGTACATCATAAAAAGTAgacattttgtgttattttatgatGATTGTGTTTTATCCTCTCCACAAAGAACTGTAAATGTGACTGTTTTACTTAAACCCAAACCAATACTctcttttataatgaattaaaatgaattggATTCATTAAACCATTAACATTAGTCCAAATGTAACATATATGACTGTAATAATTTTTAggattgtgtttttcatttcagttttggaTGTGTCTGATCTGTCTATCTAGAAGGTGAAGGGGAAGAGTGGAGAATGGCATATGGTGTGGAGCAGCTGGAACCCCCTGTACTGAACAGAAGCCAGCATGTCTCTAAACATGCAAGCTGGTTATGGAATACGAATATGCCTTGCAGCCTTATGATGCTGAGCTTCAGAGGTCATGCTCACAGCTTGGCTCTCAGAGACGAGGTGGACACTGCCAGTCACTGTGCCACTGCAGATACTACCCACCTctacctcctccacctccacctccacccccTCCTCGGCTTCTCATCCCCAAAGTGGTTGAGCCTCCAGTTCCTCTGCTAAGGCCGTGGTGGATGGACTTCATTGTGGTTGTGACAGTAGGATGCACTTCGGCTTTCTTTCTACTCTTAATTCTTCTCATCTACTACAAGGCCATTAAACGtgattggcagtttGATACAAGGTACAGCCCCTTTGAGAGGTCTCCCAATCATCATACGGAGATGGACCAGACAAGCAAAGAGCTCATTGTCCAATAaacattgagattttttttttcctgaatgaatgaataagcaGCACGATATTACAGTGagGAAACCTcttaaaaaagaggaaaatggcACTAGTCGTGGAGAATATGCCATGAGCTGCCGCAAGAAAAAGACCACTAATAACATTGTACtgtaaaacagacacacataaaGAGC

Function

symbol description
prima1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRIMA1 (proline rich membrane anchor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192936 False 2521 TUCP 0.42 4 10404085 10415002
XM_026934022.2 False 1249 mRNA 0.49 5 10405534 10415025
XM_026934023.2 True 2548 mRNA 0.42 4 10404074 10415018
XM_034307800.1 False 1037 mRNA 0.40 5 10405534 10417586

Neighbor

gene id symbol gene type direction distance location
LOC113538709 LOC108269951,LOC108423515 coding downstream 45337 10329684 ~ 10358737 (-)
ttc8 ttc8,LOC106611037 coding downstream 83125 10312078 ~ 10320949 (-)
ndc80 ndc80 coding downstream 114917 10280193 ~ 10289157 (-)
LOC113538853 nek9,LOC107724238 coding downstream 125405 10266040 ~ 10278669 (-)
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 153318 10247906 ~ 10250756 (-)
asb2b LOC108270465 coding upstream 6241 10423827 ~ 10431819 (-)
ddx24 ddx24 coding upstream 21073 10438659 ~ 10443547 (-)
si:ch1073-416d2.3 serpina10 coding upstream 27610 10445196 ~ 10449349 (-)
atxn3 atxn3,LOC108423524,LOC107683100,LOC107568569,LOC107677681 coding upstream 31894 10449480 ~ 10457781 (-)
spred1 spred1 coding upstream 64587 10482173 ~ 10508229 (-)
LOC117598311 NA non-coding downstream 110508 10291649 ~ 10293566 (-)
G162818 NA non-coding downstream 139957 10262443 ~ 10264117 (-)
G162812 NA non-coding downstream 149861 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 553745 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 579325 9824614 ~ 9824749 (-)
G163083 NA non-coding upstream 188471 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 266472 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 861091 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 874240 11291826 ~ 11292204 (-)
G163589 NA non-coding upstream 1236754 11654340 ~ 11655134 (-)
acyp1 acyp1 other downstream 142609 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 887623 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1338796 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 3134942 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 3595505 6807484 ~ 6808569 (-)
fam98b fam98b other upstream 54400 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 781551 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 978596 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1139017 11556603 ~ 11592257 (-)
trnal-cag_11 NA other upstream 1803004 12220590 ~ 12221638 (-)

Expression


Co-expression Network