LOC113538853 (nek9,LOC107724238)


Basic Information

Item Value
gene id LOC113538853
gene name nek9,LOC107724238
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10266040 ~ 10278669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308007.1
GAATCATTTCGGGATCCGACTCTCCGCGCTTTGCCACGCCCCTTATCTGCCTCATATTGGAGTCAGAGAAACGGGACCCGACTAACTAAAAAGTGATGAACACACAGCTAGAGCTCTGGATGTAATTGTGATTTTAGATAGAAACCTTGGCGTTGTAACAGTTGTATAGTTCTGTGAGAGTTCCAGAGAGGTCTGTGTCAGCTGGCTAGTTACCTAAGTTTGTTAAATCCGCGACGtatctaactagctagcttagctaacgTCAAACTTTTGAGCCTTTTTTGGCGTGCCAAGCTGTTTGTCTGCGGGCTGTTATGAAGAACAAACAAGGAAACGTATTTTAGAGTTAGTCGTACGTCTTTAATATCAAATACGTGTAGTTTTACAGAGATGTCAACTGagtaaatccttttttttaactaaaatacAACACTAGTTTTGGCTAGgttgctaatgctagctagacAACCAGTAGAATTTTATTAGCTAGCAAATCTGACAAAATCATTGGTAGGCTCGAGACTGTACTTGTGCAGGAGTGTTAATATTACAAATTTAGCTAGCTGGAGTGATCAGGCTGCGCGGCGCTGATCATGTAGTATTGTCTCATTACTGCCATCGTGTTTATCATCAACTAAACGGCTGTCAACAAAATGTCATTGGAAGATTATGAGCGGCATTACGCGTCTCTGTCGGACTCGGGCTGTGAGTCAGTGAGCAGCGCCCCGGCACCAGGCCTGTTCAGCGGCGAGGAGGAGAAGTTACACTACATTCCCATCAGGGTGCTGGGGAAGGGCGCTTTTGGGGAAGCCACCTTATACAGACGCACAGAGGATAATTCCTTGGTGGTTTGGAAGGAGATTGAGCTGACCGGTCTCTCAGATAAAAAGCGCAGAGATGTCATGAATGAAATCAGCATCCTGTCCATTCTCCAGCATAACAACATCATAGCGTATTACAACCACTTTATGGACAAGAACACCCTGCTGATTGAGCTGGAATACTGCAATGgtggAAATCTGTATGACAAAATTAACCAACAGAAAGGACAACTCTTTACACAGGaggTTGTTATATGGTATCTGTTCCAAATTGCATCAGCTGTGGCTCATATTCATAAAGCTGGTGTTCTGCACAGggacataaaaacattaaatatcttcCTCACCAAGACAAACTTAATAAAGCTAGGAGACTATGGTTTGGCTAAGAAGCTGGATTCAGAGTATTCAATGGCAGAGACATGTGTAGGCACTCCATACTACATGTCACCGGAGCTTTGTCAAGGGGTCAAGTACAACTTTAAATCAGACATCTGGGCCATGggctgtgttttatttgagCTTCTGACTCTCACCAGGACCTTTGATGCAACGAATCCTCTGAATCTGTGTGTGAAGATCGTCCAGGGTAACTTTACTATGGAGATGAACTCAGATGTTTATTCATCAGAGCTCATAAAGATAGTCTACGCATGCTTAGATCAGgATCCAGAGAAGAGACCGACTGCTGATCAGATTCTTGACCGGCCTATCATCTCCTGTGATAAACAGAAGTTTGAGGGGCGTGTGGCTGCACTGAATTCAGCCATAAAGAAGCCCAGGTTGAGCACAGTATCAGACACCCCAGTTGCTGTAGTAACCACTCGTTCCAGAGAGGTGTATTTCTGGGGAGGAGGGAAGTTCACCCCTCAGAAACTGGACGTGTTTAAGGGTGGCACTAGTGCTCAGCAAGTGTGTGCAGGGGAGACGCATTTCGCTGTGGTTACTGTGGAGAAAGAGCTTTACACTTGGGCTAGTGTGCAAGGTGGTGCTAAAATGGTGGGCCAGCTTGGGCATGGGGATCAGGCTTCATATCGACAACCTCGCAAAGTGGAACGTCTGCAGGGAAAAGCCATCAGGCAGGTGTCTTGTGGGGCAGACTTTACTGCCTGTGTAACTGATGAGGACCAAATGTACATGTTTGGCTCAGACTATTACGGCTGTATTGGTGTGGAGAATGACATGGGTATGGAGGTTCTTGAGCCGGTTCTGCTGGAGTTCTTTCAGGAACGACCAGTGCGACAGGTGTCTTGTGGAGACAACCATGTGGTAGTGTTGACTCACAGTGGAGAAATCTATTCCTGGGGCTGTGGAGAACATGGTAGACTTGGCCTGGACTGCGAGGATGACTTTGCCTCTCCTATGCTAGTGGAAGTGCCAAAGAGTGCCTCTATTGCCTCAGTGTGCTGTGGCAACGATGGAACTTTTTTCCTTACAGAGTCTGGAAAGGTCTTGGCCTGTGGAAACAACGAGTTTAACAAGCTAGGTCTCAATCAAGGCATTACTGGTATCAAGAACCACCCTGGGGAGGGTTGTCAGGACATACCATACACAACAACTCTGACTTTAGTAAAGCTGCTTGCCCGGTTTAAGATCCAAATCATCGCCCCTGGAAAGACCCATACAGCAGCCATTGATGAACGGGGGCGTCTGATGACATTTGGCTGTAATAAATATGGCCAGCTTGGTGTAAAGGACTTTAAGAAGCATCAAGGGGTTCAACTGCTTTTAGGACCCTTTGGGGGAAAAGTTGTCTCCAAAGTGTCCTGTGGAGATGGCTTCACGATTGCTGCCACAGAGGATAATCAAATCTTTGCCTGGGGAAATGCAGGAAATGGCCGTTTAGGCATGCCTGCTGATCGAGGATTTGGCTCTGAGGTTTGCCCCGCTCTTCCTCGCCCCATATTTGGTTCCCTGCATCACGTACCTGACTTGTCCTGCAGGGGTTGGCACACAATCATTATCATGGAAAAGCTGCTTAACTCCAAAACAATCCGTTCAAACAGCAGTGGACTGTCCATTGGAAGTGGGATAGGTCAGAGCTCCAGCTCCTCTATGGACTTGGATATTGAGCCTGGGTCAGACTCTGAGCTGCGTGAGGGCTTTATGGGAGGCACTGTGGAGGTTGACCTGGAGGAGAGAGGTCCCGAGACTCCATCAATGGTATTAGTGGAGAGCAAGACCAATGAGAGTTCTTGTCCATCTTGGCTCCGCAAGGAGCTGCTGGATGCAGAATTCATCCCCATGCCTGATGGCTCCAGAGATTCCATGTCTAGCCCTCTCGCTACGTCTTTCACAGAACGCGCTACGCTCCCATATGACGAGCTTCAAGAACTAAAGgcagctgctgcagctgctgctaGTGGGAATGGCTTTATGCAAACAGTATGGGTAGACTATGAGAGCATAAATGGCTTGGACTCTGGAGCATGGAAGAAAAGTAACCTGCCACAACAATGTCCACAACAGACTTGCTGCCAAGCGAGCAGTGAGCTTGCACAGCTCAAAGAAGTGGTGAAAAAGAAAGACGCAACAATCCAGCTGTTACAGAAACAGTACAATGACCAGCTCCAAGAGAATGAGAGACTTCGGAAAGCCATTAATGACCTCAAAGAAGCATCTGATCATTGTGACAAGAGGAACCACCAAGGGAGTCTACCTGATAAAGAAGAatgagggagagaatgagacagaacaTGGATTTTATAACAGAATGCAGACAAAAAAATCTTCTCTGAACTGAAACCTCAGTGAGTGAGTAGCTGACTGGGGAAGATGTTAGTCATTTGGACCTGAGTCTTCCTTCCATCACAGTATGAGGGGAAGGACTGTGCATCACAACATATTTTTGCTGCCTCTTGGTAAAAATCAAAGATTATTCTCTTCTTATGTTAGTACAAGGTTATATTAGTTGGCCACAGCATTCCTGCTACATCATGTCTATGTTTATATGCATGTCAGGCAACagtgtaataattttttattcttgaacCACAATATGAATAATTCGGGATCGGGACTGCTCAAGACTTGACAGATCTTTAATATGTCTATTTGGATTGTGGAAGCTATTGCCAAGACAGCACCTGACAAGCTTTAAGCCATTTCACGTGTGGTGCCATTATCTTCAGTATTGATTTCTACACCAAAATGTCTTTTGTGGTTTTCCTCACAGGAGAAAATGCGTAGACATTTCCTTTGGTTGTGTATTGTGGGGCCTTTAGATTAGATATGCAGAAACAATATTCATATCTATTTTCTCATATGTCTCTTAACATACTTTATTTTGAAGAGTTATTGAGACCTGCAACTAATGatgcatcatttaaaaattttaatccgTTATGTGCAAATGTGTATATGAATGGTTTTCACATATCATCCAAGAATCTGTGATGATGAATGTACTACTGATTTTCAGACTATGTGTGATTGTCTCCCTCTTGTGGTTGcggtgtgtattttgtatagTTCAGGTGGCACTAATGAGAGGTGACCTACTCCTGGATGTTCTTTATGTAAGTGTTTCTAAATATGGGTTAATCTTGGGGTGCTTGTCATTTCTTTAATTGTGCctccttgttttctttctttgttcttttgtttcttcTAAGGAAGTGAGGAAAGGAAAAAGGACAGCAAGAATCAAGGGTGAACATATTTACCAATTGAGAGATCCTTGCTTGCTGGAGCATTACATTAAAGCAACTTATTGATGATGCTACACAGGGCATAATGAATCTGCATATGCACCGCTTGGAGATCAGGcacattttaattgctttttattCAAGGTTTTTATTTGTACCTATTAGTGAAATTTCATGCATCATGTTATTGTAACATTTATTGGAATTTGATTTTATAGGAGAGGTGTATATAACCTgtaagatatgtagaacataaaaaaagaaaagaaaaaaaaacagattaagctgtggccttagcaaaagtttAGTAAGTCACTGAGAAAACCTGTC

Function

symbol description
nek9 Enables protein kinase binding activity. Predicted to be involved in cell division and protein phosphorylation. Colocalizes with centrosome. Implicated in lethal congenital contracture syndrome.

GO: NA

KEGG:

id description
K20878 NEK9, NERCC1; NIMA (never in mitosis gene a)-related kinase 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308007.1 True 4801 mRNA 0.44 24 10266040 10278669

Neighbor

gene id symbol gene type direction distance location
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 15284 10247906 ~ 10250756 (-)
jdp2a jdp2,jdp2a,LOC107702236,LOC107701522,LOC107723272,LOC107589793 coding downstream 18892 10233971 ~ 10247148 (-)
flvcr2a flvcr2 coding downstream 35339 10214843 ~ 10230701 (-)
trnal-aag_1 NA coding downstream 56410 10209549 ~ 10209630 (-)
trnal-aag NA coding downstream 57832 10208127 ~ 10208208 (-)
ndc80 ndc80 coding upstream 1524 10280193 ~ 10289157 (-)
ttc8 ttc8,LOC106611037 coding upstream 33409 10312078 ~ 10320949 (-)
LOC113538709 LOC108269951,LOC108423515 coding upstream 51015 10329684 ~ 10358737 (-)
asb2b LOC108270465 coding upstream 145158 10423827 ~ 10431819 (-)
ddx24 ddx24 coding upstream 159990 10438659 ~ 10443547 (-)
G162818 NA non-coding downstream 1923 10262443 ~ 10264117 (-)
G162812 NA non-coding downstream 11827 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 415711 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 441291 9824614 ~ 9824749 (-)
G162514 NA non-coding downstream 644355 9621382 ~ 9621685 (-)
LOC117598311 NA non-coding upstream 12980 10291649 ~ 10293566 (-)
G163083 NA non-coding upstream 327388 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 405389 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 1000008 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 1013157 11291826 ~ 11292204 (-)
acyp1 acyp1 other downstream 4575 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 749589 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1200762 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 2996908 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 3457471 6807484 ~ 6808569 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 125405 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 193317 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 920468 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 1117513 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1277934 11556603 ~ 11592257 (-)

Expression


Co-expression Network