G163414


Basic Information

Item Value
gene id G163414
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 11291826 ~ 11292204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU193480
ctgaatgtgagcagagagtatagccctatacacctcagaattcatcttgctgcttctgtcagcagtcacatcatcaataaacaccagtgagcccgttccattggcagccatacatgcccatgccataacactgcctccaccatgtttgacacatgatgtggtatactttggatcatgagctgttcctttctttcgccatacatcccatcattctggtacaagttaatcttggtttcatcagtccaaagaatcttgttccagaacatgggaggcttttttagatgttttctggcaaagtctaatctggctttcctgttcttaaatgttaccagtggtttgcaccttgttgtaaaccctctctATTTACTTTCacgaaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193480 True 379 lncRNA 0.43 1 11291826 11292204

Neighbor

gene id symbol gene type direction distance location
trnay-gua_1 NA coding downstream 17179 11274559 ~ 11274647 (-)
ddhd1a ddhd1,LOC108269913 coding downstream 130698 11140544 ~ 11161128 (-)
fermt2 fermt2 coding downstream 156059 11097221 ~ 11135767 (-)
stxbp6 stxbp6,LOC107723262 coding downstream 201276 11039179 ~ 11090550 (-)
cdin1 c9h15orf41,cunh15orf41,cssa01h15orf41,LOC103355903,LOC105897278 coding downstream 538794 10690892 ~ 10753032 (-)
syncripl LOC108270054,LOC108423543 coding upstream 2346 11294550 ~ 11302129 (-)
LOC113539001 akirin2,LOC108269845 coding upstream 40335 11332539 ~ 11336173 (-)
ptpn21 ptpn21,LOC107663133,LOC107560165 coding upstream 47040 11339244 ~ 11354204 (-)
spata7 spata7 coding upstream 63128 11355332 ~ 11360938 (-)
LOC113538848 NA coding upstream 88114 11380318 ~ 11381286 (-)
G163411 NA non-coding downstream 12934 11278677 ~ 11278892 (-)
LOC117598339 NA non-coding downstream 606657 10684058 ~ 10685169 (-)
G163083 NA non-coding downstream 685014 10606057 ~ 10606812 (-)
LOC117598311 NA non-coding downstream 998260 10291649 ~ 10293566 (-)
G162818 NA non-coding downstream 1027709 10262443 ~ 10264117 (-)
G163589 NA non-coding upstream 362136 11654340 ~ 11655134 (-)
G163606 NA non-coding upstream 412065 11704269 ~ 11704504 (-)
G163607 NA non-coding upstream 412347 11704551 ~ 11704894 (-)
G163744 NA non-coding upstream 620477 11912681 ~ 11912881 (-)
G163745 NA non-coding upstream 620771 11912975 ~ 11913184 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other downstream 75669 11199137 ~ 11216157 (-)
fam98b fam98b other downstream 812784 10471986 ~ 10479042 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other downstream 874240 10404074 ~ 10417586 (-)
acyp1 acyp1 other downstream 1030361 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 1775375 9491217 ~ 9516451 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 103978 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 264399 11556603 ~ 11592257 (-)
trnal-cag_11 NA other upstream 928386 12220590 ~ 12221638 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other upstream 1300655 12592859 ~ 12598160 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other upstream 1499625 12791829 ~ 12813664 (-)

Expression


Co-expression Network