G163745


Basic Information

Item Value
gene id G163745
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 11912975 ~ 11913184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU193842
TCTCTGTTCTCGAAAGagggtaaaaaaaattctgcatgGCTCAGTCACAGCGAGGTCATGCTGGGTGAACGGAATActgaaatcattaaaaacatctTGCATAATTCACCATGACTCCGTTTGTAATTACCAATGCTCAGATTCAATTCCAACAGACGGGCCTGAATTTGACAAAAGATTTCCAACCAGTGCAGTTTAGCTGCATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193842 True 210 lncRNA 0.40 1 11912975 11913184

Neighbor

gene id symbol gene type direction distance location
mcm8 mcm8,LOC107594086,LOC107678783 coding downstream 177888 11725062 ~ 11735087 (-)
crls1 crls1,LOC107678734,LOC103476593,LOC106907852 coding downstream 188244 11721009 ~ 11724731 (-)
gdf3 gdf3 coding downstream 209611 11701936 ~ 11703364 (-)
bmp2a bmp2,LOC108270435,LOC108414145 coding downstream 211209 11696818 ~ 11701766 (-)
LOC113538670 plcb1,LOC108423552,LOC103033987,LOC107663155,LOC107678738 coding downstream 272876 11598325 ~ 11640099 (-)
supt3h supt3h coding upstream 15982 11929166 ~ 12013235 (-)
clic5a clic5,LOC105909474,LOC107717236,LOC107653868,LOC107733467 coding upstream 134872 12048056 ~ 12053416 (-)
enpp4 enpp4 coding upstream 140801 12053985 ~ 12058497 (-)
LOC113538884 xkr6,xkr6a,LOC108269486,LOC107734270,LOC107594145,LOC107693112 coding upstream 161265 12074449 ~ 12086964 (-)
c10h8orf74 c9h8orf74 coding upstream 179045 12092229 ~ 12099765 (-)
G163744 NA non-coding downstream 94 11912681 ~ 11912881 (-)
G163607 NA non-coding downstream 208081 11704551 ~ 11704894 (-)
G163606 NA non-coding downstream 208471 11704269 ~ 11704504 (-)
G163589 NA non-coding downstream 257841 11654340 ~ 11655134 (-)
G163414 NA non-coding downstream 620771 11291826 ~ 11292204 (-)
G163757 NA non-coding upstream 14487 11927671 ~ 11927885 (-)
G163852 NA non-coding upstream 81599 11994783 ~ 12053840 (-)
G163850 NA non-coding upstream 154245 12067429 ~ 12069821 (-)
LOC117598288 NA non-coding upstream 211274 12124458 ~ 12134461 (-)
G164000 LOC108269676,LOC103033209,LOC108428727,LOC105895699,LOC102203632,LOC100712375,LOC101464058,LOC102290137 non-coding upstream 320184 12233368 ~ 12233874 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other downstream 320718 11556603 ~ 11592257 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other downstream 506224 11396182 ~ 11406751 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other downstream 696818 11199137 ~ 11216157 (-)
fam98b fam98b other downstream 1433933 10471986 ~ 10479042 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other downstream 1495389 10404074 ~ 10417586 (-)
trnal-cag_11 NA other upstream 307406 12220590 ~ 12221638 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other upstream 679675 12592859 ~ 12598160 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other upstream 878645 12791829 ~ 12813664 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 990592 12903776 ~ 12905602 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other upstream 1166350 13079534 ~ 13086462 (-)

Expression


Co-expression Network