timm9 (timm9,LOC107729247,LOC107693171,LOC107689314)


Basic Information

Item Value
gene id timm9
gene name timm9,LOC107729247,LOC107693171,LOC107689314
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 12903776 ~ 12905602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU194859
GGCACACTTACCGTCACATGTCCTTTAGAGGCCCTtcggtgtaagtgtgtgtgtctccgtCAGATCTGAGAACAAGGGGTTTGGCTATGGCTGCTCAGGTCACAGAATCAGATCAGATTAAACAGTTCAAGGAATTCCTTGGCACCTACAACAAACTGACCGAGAACTGCTTCATGGACTGTGTGAAAGACTTCACTACAAGAGAGGTCAAAGCGGAAGAGACCTCGTGTTCTGAGAGCTGTCTACAGAAGTATCTGAAGATGACACAGCGGATCTCGATGCGCTTTCAGGAATATCATATCCAGCAGAATGAAGCTTTAGCAGCCAAAGCTGGCTTATTAGGCCAGCCACGATAGTCGACTACTGTGTGTTTTACAGACTCGTATCGTCAGGCTGTAACTCTCACCCTGCCTGCTTCATACTGGACTGATGAGGCAGAGGACAGCGAGTCAGAAGATGATGTCCTCCTATTAGGTTCAGATCCTTATCAGTGGTGGGAGGTTTCTTTCCTGTTCTTCCGATTGTGAAGACTCACCAGGTCTTATTCAGGCATAATGTGAAGGtagcattttttgtttgtttgctttttaagtAGTCATGGCCTATTTATGTCATCACTGCAAattgtatgtgacaaataaaacaaggaaat
>XM_026934225.2
CAGTGAAATGTCAATTTCTGGCACACTTACCGTCACATGTCCTTTAGAGGCCCTtcggtgtaagtgtgtgtgtctccgtCAGATCTGAGAACAAGGGGTTTGGCTATGGCTGCTCAGGTCACAGAATCAGATCAGATTAAACAGTTCAAGGAATTCCTTGGCACCTACAACAAACTGACCGAGAACTGCTTCATGGACTGTGTGAAAGACTTCACTACAAGAGAGGTCAAAGCGGAAGAGACCTCGTGTTCTGAGAGCTGTCTACAGAAGTATCTGAAGATGACACAGCGGATCTCGATGCGCTTTCAGGAATATCATATCCAGCAGAATGAAGCTTTAGCAGCCAAAGCTGGCTTATTAGGCCAGCCACGATAGTCGACTACTGTGTGTTTTACAGACTCGTATCGTCAGGCTGTAACTCTCACCCTGCCTGCTTCATACTGGACTGATGAGGCAGAGGACAGCGAGTCAGAAGATGATGTCCTCCTATTAGGTTCAGATCCTTATCAGTGGTGGGAGGTTTCTTTCCTGTTCTTCCGATTGTGAAGACTCACCAGGTCTTATTCAGGCATAATGTGAAGGtagcattttttgtttgtttgctttttaagtAGTCATGGCCTATTTATGTCATCACTGCAAattgtatgtgacaaataaaacaaggaaataAGTACATTTTA

Function

symbol description
timm9 Predicted to enable metal ion binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane. Orthologous to human TIMM9 (translocase of inner mitochondrial membrane 9).

NR:

description
mitochondrial import inner membrane translocase subunit Tim9

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17777 TIM9; mitochondrial import inner membrane translocase subunit TIM9

RNA

RNA id representative length rna type GC content exon number start site end site
TU194859 False 652 TUCP 0.45 4 12903788 12905583
XM_026934225.2 True 683 mRNA 0.44 4 12903776 12905602

Neighbor

gene id symbol gene type direction distance location
ctbp2a ctbp2a,LOC103037620,LOC108269758,LOC108428680,LOC107589601,LOC107692786,LOC107729277,LOC102781227,LOC103133568 coding downstream 48151 12825917 ~ 12855625 (-)
LOC113538827 LOC108269476,LOC108428614 coding downstream 82475 12815583 ~ 12821301 (-)
lft2 LOC108269656 coding downstream 178325 12723613 ~ 12725451 (-)
ahi1 ahi1 coding downstream 181718 12708908 ~ 12722058 (-)
syne1b syne1 coding downstream 226804 12603022 ~ 12676972 (-)
atg14 atg14,zgc:113944,LOC107729264,LOC107693176,LOC106602264 coding upstream 167187 13072789 ~ 13077961 (-)
mapkbp1 mapkbp1,LOC108270220 coding upstream 186410 13092012 ~ 13129747 (-)
mgaa LOC108270087 coding upstream 225753 13131355 ~ 13158025 (-)
tyro3 tyro3 coding upstream 253700 13159302 ~ 13178292 (-)
foxa1 foxa1,LOC106611236 coding upstream 322303 13227905 ~ 13235196 (-)
G164522 NA non-coding downstream 314949 12583737 ~ 12588827 (-)
G164523 NA non-coding downstream 320552 12582783 ~ 12583224 (-)
G164521 NA non-coding downstream 321570 12582004 ~ 12582206 (-)
G164520 NA non-coding downstream 324168 12579375 ~ 12579608 (-)
G164244 NA non-coding downstream 326400 12576976 ~ 12577376 (-)
LOC117598239 NA non-coding upstream 4727 12910329 ~ 12916164 (-)
G164672 NA non-coding upstream 141801 13047403 ~ 13047619 (-)
G164676 NA non-coding upstream 149142 13054744 ~ 13056987 (-)
G165084 NA non-coding upstream 411191 13316793 ~ 13317066 (-)
G165088 NA non-coding upstream 412114 13317716 ~ 13319064 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other downstream 90112 12791829 ~ 12813664 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other downstream 305616 12592859 ~ 12598160 (-)
trnal-cag_11 NA other downstream 682138 12220590 ~ 12221638 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other downstream 1311519 11556603 ~ 11592257 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other downstream 1497025 11396182 ~ 11406751 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other upstream 173932 13079534 ~ 13086462 (-)
trnal-uaa_1 NA other upstream 949786 13855388 ~ 13855792 (-)
G165451 LOC108269968 other upstream 1282636 14188238 ~ 14190485 (-)
exd2 exd2,LOC107558452 other upstream 1285089 14190691 ~ 14200797 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other upstream 1821531 14727133 ~ 14772881 (-)

Expression


Co-expression Network