ahi1 (ahi1)


Basic Information

Item Value
gene id ahi1
gene name ahi1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 12708908 ~ 12722058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934476.2
attggtgcTTTCAGATGACTACGTCACACGGAGGCTGCGCTAGAACTTGTTTATTATTGGATACCATCGCAACCGCTTACTGGCTAATACAAtagctagttaaaaaaaaaacttttaaaagcCGTGATTTAGTGTTTAGGCTTTTCTGAAGCAGCTTCAACCATCAGAAGTCACTTCAGGCTATTTTTACTCAGATTTAGGTGCATGTTGTACACAGAATGAATTTGCCCCTGAATTTTCGAGAATGCCAGCAGGTCAGAGTGATGTGAGAGCAAAGCCGAGAACCCACTTTGATGAGGTTTTAAGGAGATATACAAATCCTCCTTCACAGAAGAAAAAGCCCAAACAACAAGCTGAGCAGCTGCAGGAGAATGTTGAGCTTCAGACCTTAAGGAAAAACTTGACCAAAGACACTAAGGAAGATGAGACCATTCTCAATAACACATATGACCCTGTTCAGGGCAGCCCAAGGTACACGAAGAACAGGCGCAGGGAGAATGAGGTGTTTAAGAAAGCCAACGTCAGTAATGTGGGTGAGGAAATGTCCACTGCAATCTCAGGAAGAAAGAAGAGCAAAAGAGCACTCCCTCCACTACCTGTTCAAGATGAAGACGAAAGTGACAAGAATGCCCTGAGCTCTGAAATAAAACTTCCTGCTGAGGCAGATTTGGGGCAGAAGAGAAAGGGTAAAAAAGGGAAGAGTAGAAGAGGCGATGATGCTGGTGTTAGGAAAGCAGAATCTGAACCTGAAGTTGATCTCCTTCAGGAGTATCAGCAACAGATTACACATCAGGAGCAGAGGGCTCTGAAGGAAACCCAGCAAAAGAAACAGAGTGAAACGCTGCAAGAAGTAATTGTATTAAACAAtgaattagaaaagaaaaagaaaaagaagaatctgAAGGAAAGTAAAGGAGATGAAAGTGAAATTCTATCAAAATGCCACCAAAATCACATGGAATTAGCGGCTGATAAAACTAAATCAAAGGAAGACTTTCAAAATGATGTCCtagaagaggagaaagaagagaCAGTCAAGCCCATAggcaaaaagaagaagaaaaggaagcaAGAAGTGATAGTACAGGACAGTCAGACAGAAGTGGATGCATCTCCTAGCCAGGCCTTTGATGACAGCCTGGTGCTGGGAGTTTACATTCACCGTACAGACCGACTCAAGACGGACCTTCTGGTGTCCCATCCCATGGTCAAAGTCCATGTTGTGGATGAAATCACTGGACAGTATGTCAAGAAAGAGGACAGCCATCGTCGAGTGTCTTCTTTTTATGAACAGGAGAATGTTGAGCATGTCCTTCCCATTATAACTCAGCCTTTTGACTTCAAGAAACAAAAGTCGACAGTTCCTGAGTGGGAGGAGCAGATCGTCTTTAATGAGCGTTTTAGTTATTTTCTTCAACAGAATGATGAGGCTCCAAAGGTCATCCTCTTTTTTGAGATCCTTGAATTTATGAGCATGGAAGAAGCAAGGGCAAATGCCTCTGCTGACCTGAGCGAGCGAGGATTTCGCAAAATTGCTTGGGCTTTTTTGAAGctCGTAGGGACCAATGGTGTGCTGAACGTTGACAGTAAACTGCGTCTCCAGCTGTACAGCCCTCCACCCAGAGCTAGGAAGAATCCACAAACGCTCGAGGTGTTTCAGTGGTGGTCAAAATACGCTTGGAACAGATATGCCTCGACTCTTTATGTCACTGTGAAAGGCCTTAAACTACCAGAACACGTGGACCCCAGTATACGCTCGATGATGGCTCTGCAGCAGGAGAGGGGCAGCACCTCATACACTGAGCTCCACACTGAACTCACTCAGAAAACTTTCACCCAGCTGTTGGAGAGCAAATCAGATGCTATAAAATGGAGCCGCCTGCCTGGACAGGTGTGTCGTATTCCTAACAAACCAATGCTGTCATTCCGTGGAGGTCAGATGGGCTGCTTTGTTCTACGCTTCTCTCATGATGGCAGGGTCCTGGCTGCTGCTTGTGCAGACAGAGATGCTTTTCCCATTATAGTGTATGAGATCCCCTCGGGCAAAGTCCTAGCATCTTTTAATGGCCACCTCAGTATTGTCTATGATCTCTGCTGGACCAGAGATGACACGTGCCTGCTGTCAGCATCCTCTGATGGAACAGTCAGAGTGTGGAACATTGAAAGACTCCAAGGACTTGCTCAGAAGATCCTCCCCCACCCATCATTTGTATACTCTGCCCAGTTTCACCCTCAAGCCCCGAGCCTGGTGGTAACAGGGGGCTATGATGGTCTGCTTCGAATGTGGAATTTAGACATTAAAGACGTGAATGGACAACTCCTGCAAGAGTTTGAGGGACACAAGACTTTCATCAATGCACTGTGTTTTGACAATGAAGGAAGCAGGATGTTTTCTGCAGACAATGCTGGCCTGATTATTGCATGGAGTACTAAAGTTGAGGATGGATCACAGCATGGAGCAGCACGTCAGTGGAAAATTGAGAAAGAAATAAAGGAAAGCGATCTGAATGGAATTCCTATCAGCTCACTAGAAGTGCATCCAAATGGAAGACGGCTCCTAATCCATGCCAAAGACAGTGTTTTGCGAGTGATGGATTTGAGaatcttcgctataaagaaatatataggTGCCACAAATTACAGGGAGAGGATCAACAGCACCTTCACCCCATGTGGAAACTTCATCTTCTCAGGCAGTGAGGATGGACTTGCCTACGTGTGGAATGCTGAGACCGGTGATCAAGTGGCTGTGTACTCAGAGCTGTGCTACCCAACTGCTCTCCGTGGAGTGGCTTTCCATCCCCATGAACATTTAGTGGCTTTCTGTGCCTTTGGGCAAAATCAGCCAATTCAGTTATATGTGTATGACCGAAAAGTTACTCAGTTGGAGCTGGAGAGTATGAGAGTGCTGAACAGATCCGACACTGCTGTCAGTAAAACACTGAGGAATCAGACCGAGATCCCTGCGTTCCAGGATGCTTCAGCCTCTGGAATGGACCGATTTGCCAGTGCTGCTCGCATGTCCCTCAAGATGCAGCGAGTTAAACAGAAATTAGACTCAGTTCTGGAGCCGCATCGCAATACCTCTGGCATGGAATACCTCTATGAACAGGgAAGCATGTCTCACTTGGCGAGGGGCTTATCCCAAGAGGGTTTGCATACTTCTCTCCCCGCTCCATCTCTGCTTTCTCCTCACTCCAATCTGCAGCTGTCCAGCTCACTTGGTGCTCAGCTAATTCCTCAGGCCACGCTCAGCTCACAAACATTTGGCTCCAGTGCTTTTGGTCATCCCATTAGAAGAATGCCATCATTAAAGCCAAAGAGTCTACCAGATTCTGAATTTCCATTACAAGTTGAGACTGATGTGGAACAAGTCCAGCAGACGGTTGTGACCCTGTATGACTACAACGCCAATCGCTCTGATGAGCTGACGTTACGCCGCGGTGATGTGATCCATGTGCTGCACAAAGATAATGACAACTGGTGGTTTGGATGCTTAGCCAGTGGACACCGGGGCTACTTCCCAGCTGCCTACGTGGCTGATGAAAaaGGGTTTGATGACGAGCTCTCACGGGCTATAGAGGCACAACCTGAACCCTTAGAGCAAATAACTGAAGGAGTTAACAGAGCCACAGCCACCAAGTTGTCTGCAGCTGTCAGTGCCTCTGGGGAGCTGAAGATCATTTCGGAGCAGGAAACTGATGCTGAGGCACCTTCTGTCAAaaataaaaggaagaagaaaaaggtgAAGAAAAGTGAGCTGTCTTATGATCTTCCACCAACCACATCTGCAGATCCTGACACTTCTATACCATCTACCAGAAAAATGAGACCTCTTCCAAGATTAGGACAAACCAACAGTGCTTTCAAATCTGATGCTACATATTAGGAGTCAGATTGGGGTGACAATTACTCaggagaaaggaaaaatatatgtatattgaaGTCACCAGTGTACTTAATCATATTTTTGCAAGCAAGCCTTCtatttgaatgtattttgtaattttataatgttcattttaataacCAATA

Function

symbol description
ahi1 Acts upstream of or within several processes, including motile cilium assembly; neuron development; and otic vesicle development. Is expressed in several structures, including Kupffer's vesicle; digestive system; nervous system; optic vesicle; and pleuroperitoneal region. Used to study Joubert syndrome. Human ortholog(s) of this gene implicated in Joubert syndrome 3; Joubert syndrome 4; and autism spectrum disorder. Orthologous to human AHI1 (Abelson helper integration site 1).

NR:

description
jouberin isoform X1

GO:

id name namespace
GO:0044458 motile cilium assembly biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K16740 AHI1; jouberin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934476.2 True 4035 mRNA 0.45 28 12708908 12722058

Neighbor

gene id symbol gene type direction distance location
syne1b syne1 coding downstream 31936 12603022 ~ 12676972 (-)
stx11a stx11 coding downstream 135187 12570957 ~ 12573721 (-)
LOC113538869 utrn coding downstream 142192 12548329 ~ 12566716 (-)
grm1b grm1,grm1b,LOC108428695,LOC107733655,LOC107692633 coding downstream 192489 12500939 ~ 12516419 (-)
stxbp5b stxbp5,LOC108428698 coding downstream 217161 12457426 ~ 12491747 (-)
lft2 LOC108269656 coding upstream 1555 12723613 ~ 12725451 (-)
LOC113538827 LOC108269476,LOC108428614 coding upstream 93525 12815583 ~ 12821301 (-)
ctbp2a ctbp2a,LOC103037620,LOC108269758,LOC108428680,LOC107589601,LOC107692786,LOC107729277,LOC102781227,LOC103133568 coding upstream 103859 12825917 ~ 12855625 (-)
atg14 atg14,zgc:113944,LOC107729264,LOC107693176,LOC106602264 coding upstream 350731 13072789 ~ 13077961 (-)
mapkbp1 mapkbp1,LOC108270220 coding upstream 369954 13092012 ~ 13129747 (-)
G164522 NA non-coding downstream 120081 12583737 ~ 12588827 (-)
G164523 NA non-coding downstream 125684 12582783 ~ 12583224 (-)
G164521 NA non-coding downstream 126702 12582004 ~ 12582206 (-)
G164520 NA non-coding downstream 129300 12579375 ~ 12579608 (-)
G164244 NA non-coding downstream 131532 12576976 ~ 12577376 (-)
LOC117598239 NA non-coding upstream 188271 12910329 ~ 12916164 (-)
G164672 NA non-coding upstream 325345 13047403 ~ 13047619 (-)
G164676 NA non-coding upstream 332686 13054744 ~ 13056987 (-)
G165084 NA non-coding upstream 594735 13316793 ~ 13317066 (-)
G165088 NA non-coding upstream 595658 13317716 ~ 13319064 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other downstream 110748 12592859 ~ 12598160 (-)
trnal-cag_11 NA other downstream 487270 12220590 ~ 12221638 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other downstream 1116651 11556603 ~ 11592257 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other downstream 1302157 11396182 ~ 11406751 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other downstream 1492751 11199137 ~ 11216157 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other upstream 69771 12791829 ~ 12813664 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 181718 12903776 ~ 12905602 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other upstream 357476 13079534 ~ 13086462 (-)
trnal-uaa_1 NA other upstream 1133330 13855388 ~ 13855792 (-)
G165451 LOC108269968 other upstream 1466180 14188238 ~ 14190485 (-)

Expression


Co-expression Network