G164672


Basic Information

Item Value
gene id G164672
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 13047403 ~ 13047619 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU194950
CATGGTGATATCAAGCAAGCCAACATGGATCTGAACAGATAACTATGCTGGCCtaagatggttttttttttagcagggtTATAATGATGAGTCTTTAATTAATCTGGTGGGAAACAGAAAAGAGCAAAGGAATAAGACTGAGCCTTTGAGTCAGGACCTTTTTCTGAACTCTGTCATGctcattttgtttattcattaaagacagttaacacatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194950 True 217 lncRNA 0.37 1 13047403 13047619

Neighbor

gene id symbol gene type direction distance location
ctbp2a ctbp2a,LOC103037620,LOC108269758,LOC108428680,LOC107589601,LOC107692786,LOC107729277,LOC102781227,LOC103133568 coding downstream 191778 12825917 ~ 12855625 (-)
LOC113538827 LOC108269476,LOC108428614 coding downstream 226102 12815583 ~ 12821301 (-)
lft2 LOC108269656 coding downstream 321952 12723613 ~ 12725451 (-)
ahi1 ahi1 coding downstream 325345 12708908 ~ 12722058 (-)
syne1b syne1 coding downstream 370431 12603022 ~ 12676972 (-)
atg14 atg14,zgc:113944,LOC107729264,LOC107693176,LOC106602264 coding upstream 25170 13072789 ~ 13077961 (-)
mapkbp1 mapkbp1,LOC108270220 coding upstream 44393 13092012 ~ 13129747 (-)
mgaa LOC108270087 coding upstream 83736 13131355 ~ 13158025 (-)
tyro3 tyro3 coding upstream 111683 13159302 ~ 13178292 (-)
foxa1 foxa1,LOC106611236 coding upstream 180286 13227905 ~ 13235196 (-)
LOC117598239 NA non-coding downstream 131239 12910329 ~ 12916164 (-)
G164522 NA non-coding downstream 458576 12583737 ~ 12588827 (-)
G164523 NA non-coding downstream 464179 12582783 ~ 12583224 (-)
G164521 NA non-coding downstream 465197 12582004 ~ 12582206 (-)
G164520 NA non-coding downstream 467795 12579375 ~ 12579608 (-)
G164676 NA non-coding upstream 7125 13054744 ~ 13056987 (-)
G165084 NA non-coding upstream 269174 13316793 ~ 13317066 (-)
G165088 NA non-coding upstream 270097 13317716 ~ 13319064 (-)
G165090 NA non-coding upstream 273325 13320944 ~ 13326687 (-)
LOC117598244 NA non-coding upstream 282020 13329639 ~ 13345648 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 141801 12903776 ~ 12905602 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other downstream 233739 12791829 ~ 12813664 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other downstream 449243 12592859 ~ 12598160 (-)
trnal-cag_11 NA other downstream 825765 12220590 ~ 12221638 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other downstream 1455146 11556603 ~ 11592257 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other upstream 31915 13079534 ~ 13086462 (-)
trnal-uaa_1 NA other upstream 807769 13855388 ~ 13855792 (-)
G165451 LOC108269968 other upstream 1140619 14188238 ~ 14190485 (-)
exd2 exd2,LOC107558452 other upstream 1143072 14190691 ~ 14200797 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other upstream 1679514 14727133 ~ 14772881 (-)

Expression


Co-expression Network