stx11a (stx11)


Basic Information

Item Value
gene id stx11a
gene name stx11
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 12570957 ~ 12573721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934276.2
AGGAACTGTTGTGGTGGTTCTTTTGAagactgtggttttttttttcctcatttgaaACCTTGGTGATGTTGAGTGCAGGATTTGTGTGTATTATGGGCTGTCAGATGAGAAGACTGCAGTGTTGAGAAGACGCTGTGTGGATGAAGTGCGACTCGACGCTGACAGAGAACTCGACCACTGCCACTTTCGGTAACTCCCACTAGTCGCTTGGCTGCTATTTCCTGCAGCGATGTGAGAGTGACGAGGAAGAGCAAAGAGGAAAAACTTCGATCAGTTGAATTTTAAATCTGCATATTTCTGCTGGTCCACGGAGCATGAAGTGAGGAGAAATGAAGGATCGACTGGATGACCTGAATAGTATTATATCTAAAAACTCCCAGGAGGAGCCTTGTGTAGAGAACGGGGAGAACGTAGACAATGGTGAGCTGGAGCAGCATGCCGTGGTGTTTGAGGGTGAGGAGATCATGGACGACGTGTTTAAGGAGGCCCAGTCTATGCACAAAAAAATAGCTTACCTCAGATTGGAGGTGAAGAGGCTGGACAAGCAGAACACCCGTTTTCTCACCTCAGTCAGACGCATCAGCAGCATCAAGCGGGACACCAATGCCATTGCACGCAGCATCAAAGCTGAAGGAGAGAAGCTGTATGCGAGGCTTCAGCAGATGGAGGCAAAGTGCAAAGAGCTGGAGGAGAAACACGGGGCCCACTCTGCGTTAGCCCGCATGGTGCGCTCTCAGTACAACTCTTTAACCAGTGCCTTCCATGATGCAATGTCTGAGTATAATGAGGCTGAGATGGCACAAAGGGAAAACTGCAAGATACGCATACAGCGACAGACAGAGATCATGGGCAAGGAGGTGACTGGGGATCAGATCGAAGAAATGATCGAGACTGGTAAGTGGAACGTCTTCTCGGATGACCTTGTCACAGACGAGAGAGCCTTCCGCTCAGCGCTCAACGAGATCGAGAACCGTCACAAGGAGCTTCTAGAGCTGGAGAGCCGCATTCGGGACATTCGTGAGCTCTTTTTTCAGTTGGCTCTGATGGTAGAGCAGCAAGGGGCTATGGTGGATAACATTGAGGCTAATGTATGTGCAACAGAAGAATTTATAGGCAAGGCTACAGTTGAGATCAAGAAGGCTGTAAAATATAAGAAGAAGAACCCGTGTAGGCAGCTCTTCTGTTGTTGTTTCCCATGTTGCAATAAGTGAAGTATAATATGCTTTACTGCTGTCTCATGGCACTCCCGTTTCAAAATAACAGATTAGCTTAACAAATGCATAGTGGATTTGTGTATTTAATTGACATGTCTTTGGTGGAGCTGCATGTGGTTGTTGCACAATGGTCATGTGACTAACAGGCATGCACATTTCACCAgccagttaatttttttttatattgggCAGAGAATACTGGCAAGTCACCTGAACGTGTTGTGACATGGTGTGACAGAACCCAGTATCTTGTTAACCACTAGATCAGCAATACATGAAAACTGCACTGCTTATTATCCCAATGGAATACTTGTGTTGtttctgttctgtgtttaaacattaatatgatACCTGTGTAGAAATGAACTGTGGTATagtatttatgttttaaaattaattaagatGTACAATAGTtgcaaagtaaaaaaagaagcttTATATTTAAGAGGGTCCATAAACTTTATTGATGTATATTGTTTTCataattgaataaataattttaacttTGGGA
>XM_026934277.2
AAAAAGTAAGTGATGTATAAGACATAAGGGCACTGGTGTCACAGGGGCTTTCTTCGCTGAACTACTCCCACGCAGTACTTTAGCAAGAGGCCTAGATTCTCATTTCAGGCGGAGAAATGAAGGATCGACTGGATGACCTGAATAGTATTATATCTAAAAACTCCCAGGAGGAGCCTTGTGTAGAGAACGGGGAGAACGTAGACAATGGTGAGCTGGAGCAGCATGCCGTGGTGTTTGAGGGTGAGGAGATCATGGACGACGTGTTTAAGGAGGCCCAGTCTATGCACAAAAAAATAGCTTACCTCAGATTGGAGGTGAAGAGGCTGGACAAGCAGAACACCCGTTTTCTCACCTCAGTCAGACGCATCAGCAGCATCAAGCGGGACACCAATGCCATTGCACGCAGCATCAAAGCTGAAGGAGAGAAGCTGTATGCGAGGCTTCAGCAGATGGAGGCAAAGTGCAAAGAGCTGGAGGAGAAACACGGGGCCCACTCTGCGTTAGCCCGCATGGTGCGCTCTCAGTACAACTCTTTAACCAGTGCCTTCCATGATGCAATGTCTGAGTATAATGAGGCTGAGATGGCACAAAGGGAAAACTGCAAGATACGCATACAGCGACAGACAGAGATCATGGGCAAGGAGGTGACTGGGGATCAGATCGAAGAAATGATCGAGACTGGTAAGTGGAACGTCTTCTCGGATGACCTTGTCACAGACGAGAGAGCCTTCCGCTCAGCGCTCAACGAGATCGAGAACCGTCACAAGGAGCTTCTAGAGCTGGAGAGCCGCATTCGGGACATTCGTGAGCTCTTTTTTCAGTTGGCTCTGATGGTAGAGCAGCAAGGGGCTATGGTGGATAACATTGAGGCTAATGTATGTGCAACAGAAGAATTTATAGGCAAGGCTACAGTTGAGATCAAGAAGGCTGTAAAATATAAGAAGAAGAACCCGTGTAGGCAGCTCTTCTGTTGTTGTTTCCCATGTTGCAATAAGTGAAGTATAATATGCTTTACTGCTGTCTCATGGCACTCCCGTTTCAAAATAACAGATTAGCTTAACAAATGCATAGTGGATTTGTGTATTTAATTGACATGTCTTTGGTGGAGCTGCATGTGGTTGTTGCACAATGGTCATGTGACTAACAGGCATGCACATTTCACCAgccagttaatttttttttatattgggCAGAGAATACTGGCAAGTCACCTGAACGTGTTGTGACATGGTGTGACAGAACCCAGTATCTTGTTAACCACTAGATCAGCAATACATGAAAACTGCACTGCTTATTATCCCAATGGAATACTTGTGTTGtttctgttctgtgtttaaacattaatatgatACCTGTGTAGAAATGAACTGTGGTATagtatttatgttttaaaattaattaagatGTACAATAGTtgcaaagtaaaaaaagaagcttTATATTTAAGAGGGTCCATAAACTTTATTGATGTATATTGTTTTCataattgaataaataattttaacttTGGGA

Function

symbol description
stx11 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within cellular response to interferon-gamma and leukocyte degranulation. Predicted to be located in phagocytic vesicle. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Implicated in familial hemophagocytic lymphohistiocytosis 4.

NR:

description
PREDICTED: syntaxin-11-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934276.2 True 1725 mRNA 0.44 2 12570957 12573721
XM_026934277.2 False 1512 mRNA 0.44 2 12570957 12572819

Neighbor

gene id symbol gene type direction distance location
LOC113538869 utrn coding downstream 4241 12548329 ~ 12566716 (-)
grm1b grm1,grm1b,LOC108428695,LOC107733655,LOC107692633 coding downstream 54538 12500939 ~ 12516419 (-)
stxbp5b stxbp5,LOC108428698 coding downstream 79210 12457426 ~ 12491747 (-)
sash1b LOC108270447 coding downstream 117935 12389853 ~ 12453022 (-)
zbtb24 zbtb24 coding downstream 192004 12373877 ~ 12378953 (-)
syne1b syne1 coding upstream 29301 12603022 ~ 12676972 (-)
ahi1 ahi1 coding upstream 135187 12708908 ~ 12722058 (-)
lft2 LOC108269656 coding upstream 149892 12723613 ~ 12725451 (-)
LOC113538827 LOC108269476,LOC108428614 coding upstream 241862 12815583 ~ 12821301 (-)
ctbp2a ctbp2a,LOC103037620,LOC108269758,LOC108428680,LOC107589601,LOC107692786,LOC107729277,LOC102781227,LOC103133568 coding upstream 252196 12825917 ~ 12855625 (-)
G164239 NA non-coding downstream 367 12570385 ~ 12570590 (-)
G164137 NA non-coding downstream 183567 12384927 ~ 12387390 (-)
G164000 LOC108269676,LOC103033209,LOC108428727,LOC105895699,LOC102203632,LOC100712375,LOC101464058,LOC102290137 non-coding downstream 337083 12233368 ~ 12233874 (-)
LOC117598288 NA non-coding downstream 436496 12124458 ~ 12134461 (-)
G163850 NA non-coding downstream 501136 12067429 ~ 12069821 (-)
G164244 NA non-coding upstream 3255 12576976 ~ 12577376 (-)
G164520 NA non-coding upstream 5654 12579375 ~ 12579608 (-)
G164521 NA non-coding upstream 8283 12582004 ~ 12582206 (-)
G164523 NA non-coding upstream 9062 12582783 ~ 12583224 (-)
G164522 NA non-coding upstream 10016 12583737 ~ 12588827 (-)
trnal-cag_11 NA other downstream 349319 12220590 ~ 12221638 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other downstream 978700 11556603 ~ 11592257 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other downstream 1164206 11396182 ~ 11406751 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other downstream 1354800 11199137 ~ 11216157 (-)
fam98b fam98b other downstream 2091915 10471986 ~ 10479042 (-)
rmnd1 rmnd1,LOC107733770,LOC107586664 other upstream 19138 12592859 ~ 12598160 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other upstream 218108 12791829 ~ 12813664 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 330055 12903776 ~ 12905602 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other upstream 505813 13079534 ~ 13086462 (-)
trnal-uaa_1 NA other upstream 1281667 13855388 ~ 13855792 (-)

Expression


Co-expression Network