G162818


Basic Information

Item Value
gene id G162818
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10262443 ~ 10264117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU192812
CTTAATCTTGCAACTATTAGTTTGCATATAATGGCAGTGGCTGCtattgtttaaataatgtaaCCTTACCTCTGGTGCTTTACTTCGACCATTTGTCTTCATAAACTCCTCTAGCTCAGTGCCTTTGGCCCGGTACTGTGAGGAGTCGAAGACTTGACGTTTgggtttttgtgttttctgacaaATGCTGATATGCTTCTCCAGACGATCTTCTGTAAAATGTCTGTTACATACTTTACAAGGTACAAGTTGGAAATCAGTGTCAGGACGGCTTTCAGGACTGAGTTGCACTTGCTGGAGCCTTTTACTGTTATGAGTGCTTGGATCAGCTTCAGGGAGTGGCTTTTTGAGAGGCTCACCTGCAGCCCTGTTACTATACTGATGCACTCTCTCTTGAGTTGCTAAATGGTCCTCTATAAGTACATTCATTTTGTCATGCTTGGAGACAGCTTTCCCTTTAATATGTGAATTTGAAGCAAACTTGTCCATTAGGTCCCACTGCTGATCCTCATCATCTATCTCCATGTCTTTCTTGAGCTTCGCTCTTTCACGTCTTCTCTTTTCTCCATCATTCACTCTCACTATTTCCTTCTCCTGCCAGTCTCTCTGGTCCCATTCTCTCATCTCACTCCCTTGTCTTTCCattgctctttctctccttgttttgtctttttcagttCTTGTCCTTTCCCACGTATGCCTTGTCATTTCTTCAAAATGGTCCCATTCCTTTTCCACAGTCTTTGTGGTTCTCTGAGTATTTCTTCCCCGGCTCTCCCACtttatttcttctctctttttctctttctgaccAGCATTTGTCTCTTTCACATGATTCACCTGTCTTTCTATAACATCTTTCGCTCTAACCCAGTTATTGAATCCCTCTCGTTGTCCTTCATGTCTTCTGACTCCTAAAGCCCTGTCTCTGGCGCTCTCCCAGTCCCAGTTTCCTTTCTCCGTATAATTTAACCTGTTTTCTGCTTTCCCTGTGTTCCTCTGCTCCTCGCTTTTCACCTTGTCCTCAGATGCAGTTCTCAGCTGAACCTTCCTCAGTCTTTCCACTGCCTTTAACAGCTTTTCTTGtaataaaatttcttttttgtgtatttcctTTGTCAGCCGGATCTCATTTTCATAAAGTCTGCGTTGGCCCTTGTGTAATATCTGGTACTCATTGAGTGATTTGCTATTGGCTTCACCTCTTTCTCGGGATAGGTCATTGGAGTCAGCATCAAAATGCTCTAATTTACTCTTATCGTGTTTCTCCTGTCTCCTGTTACTGGTCTGTTTACCGTTTTCCCAGTGCTCCTTACGGCAATCAATCCTCTTTTCGtctttttgtataaaataatcaCTGTCTGCTTGGCAGTTGCTTCGGTTAAATGCTATTCTGTGGCACCCAGGCTTCAGAGGGAACATAGTGTCCATTTCAGATCTTGCTAAGGaaatattttgcttttcttCAGAATATACTTTTCGCCTGGCAGTGGCAGAGTTGTGCCTCCTTTGGACAGGATCTGTCCAGTTGTTATAGGGGAAAATGTCCTGCTGGCAGTCTGTCATAGCTGCCCCCTTTCTCTCCTTGTCTTCCTGCAGTCTAAAAGGAAAAGGTGAATTGTGGCTGAAGCCTTCTCTTCTCAGGGGTGCAAGTTTTTCCAATACGACCcctttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192812 True 1675 lncRNA 0.43 1 10262443 10264117

Neighbor

gene id symbol gene type direction distance location
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 11687 10247906 ~ 10250756 (-)
jdp2a jdp2,jdp2a,LOC107702236,LOC107701522,LOC107723272,LOC107589793 coding downstream 15295 10233971 ~ 10247148 (-)
flvcr2a flvcr2 coding downstream 31742 10214843 ~ 10230701 (-)
trnal-aag_1 NA coding downstream 52813 10209549 ~ 10209630 (-)
trnal-aag NA coding downstream 54235 10208127 ~ 10208208 (-)
LOC113538853 nek9,LOC107724238 coding upstream 1923 10266040 ~ 10278669 (-)
ndc80 ndc80 coding upstream 16076 10280193 ~ 10289157 (-)
ttc8 ttc8,LOC106611037 coding upstream 47961 10312078 ~ 10320949 (-)
LOC113538709 LOC108269951,LOC108423515 coding upstream 65567 10329684 ~ 10358737 (-)
asb2b LOC108270465 coding upstream 159710 10423827 ~ 10431819 (-)
G162812 NA non-coding downstream 8230 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 412114 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 437694 9824614 ~ 9824749 (-)
G162514 NA non-coding downstream 640758 9621382 ~ 9621685 (-)
LOC117598277 NA non-coding downstream 674141 9586707 ~ 9588302 (-)
LOC117598311 NA non-coding upstream 27532 10291649 ~ 10293566 (-)
G163083 NA non-coding upstream 341940 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 419941 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 1014560 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 1027709 11291826 ~ 11292204 (-)
acyp1 acyp1 other downstream 978 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 745992 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1197165 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 2993311 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 3453874 6807484 ~ 6808569 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 139957 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 207869 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 935020 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 1132065 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1292486 11556603 ~ 11592257 (-)

Expression


Co-expression Network