asb2b (LOC108270465)


Basic Information

Item Value
gene id asb2b
gene name LOC108270465
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10423827 ~ 10431819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934015.2
ctctctctctctctctctctccgtctgcttctcttctctccctcgCACTCTCTGGCCCTGTCGCTTGCTTTATGTGAACATGACGCGCTTTAGTTACGCGGAATATCTCTCGTTGTTCCGTTCCAGTGGAGTGACCAGTCACCGGAGGGGCTCTGACAGCGGAGCGCGGTGCGAGGAGCCCGGTGACGTCACGCCAGCCCCATCACAGGAGCCCATAATGCTGGCAATTAGGAGAGGTGATGTGCAGACAGTGACTGAACTATCAACATCCATATCATGCATCCAGACCCATAGTGCAGTGGAAGACTGGACAGCCCTCCATGAAGCAGCGTATTATGGGCAAGCAGCCTGTGTAAAAGCTCTACTTAAAGTTAAACCCACTTCAGTAGATAAGCGCACTCTCCAGGAGCAGACTGCTCTTCTAATTGCAACTGATGGGAAGCACctggagtgtgtgaagtgtctTCTGGAGGCAGGTGCAGACCCAGATatcagcaataaaaacaaagagaCACCACTTTATAAAGCTTGTGAAAAAGAGAGCATTGACATAGTGAAGGTGATCCTGGCATTTGGAGGTTCAGTAAACCAGCGCTGCCATCGCGGCTGGACAGCTCTCCATGAAGCAGTGAGACAGGggaacacacagctctgtgaggcTCTCCTTCAGGCCGGAGCTGCCATTGATGCCACCAACGCTTACGGTATCACTCCACTCATAGAGGCAGCTCGGCATGGCAGGACAACGATTGTGAACTACCTCATTAGTAAAGGTGCTGGTGTGAACCTACAGTCATGTGAAGGGACTACGGCTCTAAGTGAAGCATGTAAACATGGTCACAGAGACACGGTAGACTTTTTGCTCAGACACCATGCAGATGCCAACAAATGCTCAAAAACTGGACTGCTGCCTTTGCACATTGCTGCTCAGCATGGCCATGAAGAGATTGTGTCTTTATTGCTGCCTGTCACTAGTCGTGCAAAAATACGACAAAGTGGCATCACTCCCCTTCATCTGGCAGCTGAGTTCAATCAGGAAAATGTTGTCAAATTCTTGATCAAGTCAGGCTGTGATGTGAACGCAAGGCTGTCCCACGAGCGCTCATCCATGTTTCATGACCACCGCAGCACAGCTCTGTATTGCGCTGTTCTAGCCGGTAATGGAGGAGTTGTGGACTTGTTGCTCAGGGCTGGTGCAAACCCCAACCTGGACCCCCTCAGCCCACTGCTAGTTGCATTACGCCAGGGATGTTTTAGGATTATATCCACACTGGTGGAACATGGAGCAAATGTTAATGCTCATGTACCAGCCCATCCCACTGATTTCCCAGGAGTGCTGTTGTATACCCATAGCATGGGAATTTTACAGTATCTGTTGAACAACGGATGTGAGGCTCAGGAGTGTTTCAGGTGTGACCATACAGACAGCAGGCAACCTGCTAGCCAAAGCAGAAGGGAGGATACAGAACAGAGGACTCCCTCAGTGACAGGAAATGCATTTCCATCACAAACAATCTGTACAGAATCAACCACCAGAAATCTGCAGTTTTGTGAGTGGATTTCCTCTGTGAGTCATATGGCTGCACCTCTGATCACTTTGCTACTGGATTATGTTGGAAATGTCCAACTGTGTTGTCGAGTCGTTGAacaattaaaaagcaaaaaagagtGGGCTGCCATTAAGGAAAAAGCATCTTCTCCTCGTCCACTGATGCATCTGTGCAGGCTGAAGGTTCGTGAGCAAGTCGGTGCCCAgagactggcatctctaaatacTCTTCCACTACCAGGCAGACTGCTCCACTATCTGTGCTGTTCACAGGACAGCGCTACAGATTATACAGTCCTAAAGCTTGGGTCCACTCACAGATAAATTGCAAGTTACGTGAGATTTCT
>XM_026934016.2
CTTGGCCTTTCAGCTCAAATAGGGAGTGAAACTGGTTTCTCAGATACACACTCAGACAGATGCACTGGATGAGGCCAATGAAATCCTGATTGAGATGTGAGTGCATTCATTTATCTACATGAACAGCCATCAGAAGTGTTCGTAAGAAGGTGTGTGGCATTTCTAAATAGCCCTGCTTCCCCAACAGATCAACTTGGAAATGCTATTAATGGCACGTGGAGTGACCAGTCACCGGAGGGGCTCTGACAGCGGAGCGCGGTGCGAGGAGCCCGGTGACGTCACGCCAGCCCCATCACAGGAGCCCATAATGCTGGCAATTAGGAGAGGTGATGTGCAGACAGTGACTGAACTATCAACATCCATATCATGCATCCAGACCCATAGTGCAGTGGAAGACTGGACAGCCCTCCATGAAGCAGCGTATTATGGGCAAGCAGCCTGTGTAAAAGCTCTACTTAAAGTTAAACCCACTTCAGTAGATAAGCGCACTCTCCAGGAGCAGACTGCTCTTCTAATTGCAACTGATGGGAAGCACctggagtgtgtgaagtgtctTCTGGAGGCAGGTGCAGACCCAGATatcagcaataaaaacaaagagaCACCACTTTATAAAGCTTGTGAAAAAGAGAGCATTGACATAGTGAAGGTGATCCTGGCATTTGGAGGTTCAGTAAACCAGCGCTGCCATCGCGGCTGGACAGCTCTCCATGAAGCAGTGAGACAGGggaacacacagctctgtgaggcTCTCCTTCAGGCCGGAGCTGCCATTGATGCCACCAACGCTTACGGTATCACTCCACTCATAGAGGCAGCTCGGCATGGCAGGACAACGATTGTGAACTACCTCATTAGTAAAGGTGCTGGTGTGAACCTACAGTCATGTGAAGGGACTACGGCTCTAAGTGAAGCATGTAAACATGGTCACAGAGACACGGTAGACTTTTTGCTCAGACACCATGCAGATGCCAACAAATGCTCAAAAACTGGACTGCTGCCTTTGCACATTGCTGCTCAGCATGGCCATGAAGAGATTGTGTCTTTATTGCTGCCTGTCACTAGTCGTGCAAAAATACGACAAAGTGGCATCACTCCCCTTCATCTGGCAGCTGAGTTCAATCAGGAAAATGTTGTCAAATTCTTGATCAAGTCAGGCTGTGATGTGAACGCAAGGCTGTCCCACGAGCGCTCATCCATGTTTCATGACCACCGCAGCACAGCTCTGTATTGCGCTGTTCTAGCCGGTAATGGAGGAGTTGTGGACTTGTTGCTCAGGGCTGGTGCAAACCCCAACCTGGACCCCCTCAGCCCACTGCTAGTTGCATTACGCCAGGGATGTTTTAGGATTATATCCACACTGGTGGAACATGGAGCAAATGTTAATGCTCATGTACCAGCCCATCCCACTGATTTCCCAGGAGTGCTGTTGTATACCCATAGCATGGGAATTTTACAGTATCTGTTGAACAACGGATGTGAGGCTCAGGAGTGTTTCAGGTGTGACCATACAGACAGCAGGCAACCTGCTAGCCAAAGCAGAAGGGAGGATACAGAACAGAGGACTCCCTCAGTGACAGGAAATGCATTTCCATCACAAACAATCTGTACAGAATCAACCACCAGAAATCTGCAGTTTTGTGAGTGGATTTCCTCTGTGAGTCATATGGCTGCACCTCTGATCACTTTGCTACTGGATTATGTTGGAAATGTCCAACTGTGTTGTCGAGTCGTTGAacaattaaaaagcaaaaaagagtGGGCTGCCATTAAGGAAAAAGCATCTTCTCCTCGTCCACTGATGCATCTGTGCAGGCTGAAGGTTCGTGAGCAAGTCGGTGCCCAgagactggcatctctaaatacTCTTCCACTACCAGGCAGACTGCTCCACTATCTGTGCTGTTCACAGGACAGCGCTACAGATTATACAGTCCTAAAGCTTGGGTCCACTCACAGATAAATTGCAAGTTACGTGAGATTTCT

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934015.2 False 1896 mRNA 0.49 8 10423827 10430213
XM_026934016.2 True 1986 mRNA 0.48 10 10423827 10431819

Neighbor

gene id symbol gene type direction distance location
LOC113538709 LOC108269951,LOC108423515 coding downstream 65090 10329684 ~ 10358737 (-)
ttc8 ttc8,LOC106611037 coding downstream 102878 10312078 ~ 10320949 (-)
ndc80 ndc80 coding downstream 134670 10280193 ~ 10289157 (-)
LOC113538853 nek9,LOC107724238 coding downstream 145158 10266040 ~ 10278669 (-)
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 173071 10247906 ~ 10250756 (-)
ddx24 ddx24 coding upstream 6840 10438659 ~ 10443547 (-)
si:ch1073-416d2.3 serpina10 coding upstream 13377 10445196 ~ 10449349 (-)
atxn3 atxn3,LOC108423524,LOC107683100,LOC107568569,LOC107677681 coding upstream 17661 10449480 ~ 10457781 (-)
spred1 spred1 coding upstream 50354 10482173 ~ 10508229 (-)
cdin1 c9h15orf41,cunh15orf41,cssa01h15orf41,LOC103355903,LOC105897278 coding upstream 259073 10690892 ~ 10753032 (-)
LOC117598311 NA non-coding downstream 130261 10291649 ~ 10293566 (-)
G162818 NA non-coding downstream 159710 10262443 ~ 10264117 (-)
G162812 NA non-coding downstream 169614 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 573498 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 599078 9824614 ~ 9824749 (-)
G163083 NA non-coding upstream 174238 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 252239 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 846858 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 860007 11291826 ~ 11292204 (-)
G163589 NA non-coding upstream 1222521 11654340 ~ 11655134 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other downstream 6241 10404074 ~ 10417586 (-)
acyp1 acyp1 other downstream 162362 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 907376 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1358549 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 3154695 7203781 ~ 7269132 (-)
fam98b fam98b other upstream 40167 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 767318 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 964363 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1124784 11556603 ~ 11592257 (-)
trnal-cag_11 NA other upstream 1788771 12220590 ~ 12221638 (-)

Expression


Co-expression Network