ddx24 (ddx24)


Basic Information

Item Value
gene id ddx24
gene name ddx24
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10438659 ~ 10443547 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933808.2
GGAAGGTGGAGTTTAGTAGAaggatctggcaaccctgtccgTCGCCAGCGCTACAGTAATGGCAGCGCCCTCGTGTAGTGCATGCGCATGAGGAACAGTTTTTACACAGTTACAGCTTCTTACAAAGGTGAAAATTCAATAAAGAAAGATGAAGACCAAAACTATGAAGGCGAAGAAGCGCTTTGGACCTTCCAAAAAAGGGATCCTTGTAAAGGGCAAATGGAAGGCTGTGGGGCTCGATCCCAGCATTTTTGCTAATGAAGCCATGGGAGAAGTGGTGTGTTTTGAAGAACTCACAGATTATTCCCTGGTTGACTCTGAAAAGACCGCAGCCATGACTGGGCTGTTACAGGACACAGCTGCCAGAAAGAAGcgaaaaaataagagaaaagcCAGTGAAATTGAGGCTGAAGAACATAACTTGGAGGAAGATCCGGATGAAGTCGTACAGCTGTCATCTGAAGAGAGTCCAGCTAAGAagtggaagaagaaaaagaagaaacacgAGAGTGATGATGTGCTCTCAGGTGATGATCATGATGGCATAAAGAGTTTGGTTGAAGAAGGAGAGGACCAGACACTACAAGACTCTGATGATTACACTGAGCTTACAGCAGAGACAACACAAAagaccaagaaaaaaaagaagaagaagaaaaagaaacagaaaagtgcAGAACAAACAGAGACTGATGCCCAAGTAGACCCTGCTAATGAGGTCCAGGTTCCATCTAAAAGAAAAGCCAAGAACTGGGCAGATGCAGCTCTCTCAAAAACAGCAGGGCAGGACACCGACGTATCGGCATGGAAAGAGCTGTTTGTACCTGAACCTGTGCTAAAGGCACTGAGCAAACTTGGATTTTCTGCACCTACACCGATTCAAGCTCTTGCTCTTCCTCCTGCCATTCGAGATCACCTGGATATTCTGGGTGCAGCAGAGACAGGAAGTGGAAAGACTTTGTCTTTTGGAATTCCGATGATCCACAGTATATTAGAGTGGAAGAAAACCATTGACAGTAAAGATGCAGGTGCAGACGGGAAATCTGACGCTGTGGCAGAAGTGGAGAGCATTTACTTACCTTCAGTCAGAGACTCAAAAGATGACTCTGAGAAAGATCTGTCCACAAAGAAGAGCACTAAGTCTGGAGAGGCTGAGGGGCAGCAGTCAAACAAGACAGGTGGAGACCTGACTGACAATGCAGCAACAAGCACAGACAAAGCCTCTAGTGCACAGAGTGACGATACAGACGATGAACACGAGGAAGAGAATCCTACCGAGGATGATGGTAGCCTGGACGGTCAAGATGAGGATGAAGACTGTGGTTCTGTTGATGAGCATCAAAGTCAAGATGATGATGGTGTAGCAGGTGATGAGGAAGGTGCATTCCAGAGCATGAGCGTTAAtataaagagagaagaaaaagatgatGATGGGAAACAGCCTTTACTTGGACTTGTTCTTACACCGACCAGAGAACTAGCAGTGCAAGTCAAGCATCATATTGATGCTGTAGCACAGTTTACAGGTATTAGAACTGCTCTTCTGGTGGGCGGAATGGCACCACAGAAACAAGATAGGATGTTGAAGCGTAGGCCGGAGATTGTTATTGCAACACCAGGGCGCCTGTGGGAGATGATTCAGGATAAACATCCTCATCTGCGCAACCTAAGGCAGCTCAGGTGCCTGGTCATTGACGAAGCTGACCGCATGGTTGAAAAAGGTCATTTTGTTGAGCTTGAGAACTTGCTGGAGATGCTCAACACGTCCCAGTTCAACCCGAAGAGACAGACCTTTGTGTTCTCCGCTACACTAACCATGATCCACAGCCTCCCTGCCCGAGTGCTGCGCAAGAAAGGAAAGAAGCTGGAGCAGCGCAGCAAGCTGGAGGTGCTCATGGAGAAAGTAGGGATCAAAGGCAAGCCTAAAGTGATCGACCTCACGCGGAAAGAAGCCACAGTAGAGACGCTGACTGAAACCAGGATCCACTGTGACAAGGAGGAGAAAGATTATTATCTCTACTACTTTGTGCTGCAGTACCCTGGGCGCACTATGGTGTTCGCCAACAGCATTGACTGCATCAAAAGGCTTAATTCACTACTAACTATTTTGGACTGCACCCCACTGCCGCTGCATGCTAATATGCACCAGAAACAGAGGCTGAAAAACCTGGAGAGATTtgcagagagggagagctgcGTCCTTCTCACGACGGATGTTGCTGCTCGAGGGCTTGACATTCCAAATGTCCAGCATGTCATCCACTATCAGGTCCCACGAACTTCTGAGACATATGTCCATCGGAGTGGACGTACAGCTCGTGCTGCAAAAGAAGGTCTCAGTTTGCTCCTGATTGGTCCAGACGATCTGATGAATTATAAGAAAATCTATAGGACGCTGGGCAAGGATGAGGATCTTCCAATGTTTCCTGTTCAGAACAAATGCATGACTGCCATTAAGGAACGTGTCGATGTGGCAAGACAAATAGAAAAGATTGAATACTACAACAGCCGAAAGAAGCAGCACAATTCTTGGTTCAGGCAGGCGGCAGAGGAAATGGACATAGACCTTGATGACGACTTGCTTTTGGGAGGAGGCAGGGaagaagagaatgaaagagagcaacagaaacatgtgaaaGGTTTAAAGAAACACCTGAAGCACCTGCTCTCCCAGCCAGTCTTCAAAGCCCACATGAAGACTAAATACCCTACTCAGATGGGCAAACTTCAGCTGCCCGAGCTACCTTTAGCCAATGAAACAGCTCTCATCAGTGTGACCaatcaaaaacagaaacaaaaacaaaagaagcgGAAAGGGAAACAGCAGCAAATGTAATGATGTTTATACCAGAAGTTGatatatttaacttttatacaaaatagtAAGACATTTTGCTCCAGTTGTGATGCATGAACTGTCTTTATGCATTTTTGTATTAGGACATTGTCACCATAACagaagtttctttttttatggtCAGTGGTGgaaaaatttgtataaaaatgtttgaagATTGTTATTGGCCGTTTgcataaaatgtttcaaattttAAGGAAAA

Function

symbol description
ddx24 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX24 (DEAD-box helicase 24).

NR:

description
ATP-dependent RNA helicase DDX24 isoform X1

GO: NA

KEGG:

id description
K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933808.2 True 3059 mRNA 0.45 10 10438659 10443547

Neighbor

gene id symbol gene type direction distance location
asb2b LOC108270465 coding downstream 6840 10423827 ~ 10431819 (-)
LOC113538709 LOC108269951,LOC108423515 coding downstream 79922 10329684 ~ 10358737 (-)
ttc8 ttc8,LOC106611037 coding downstream 117710 10312078 ~ 10320949 (-)
ndc80 ndc80 coding downstream 149502 10280193 ~ 10289157 (-)
LOC113538853 nek9,LOC107724238 coding downstream 159990 10266040 ~ 10278669 (-)
si:ch1073-416d2.3 serpina10 coding upstream 1649 10445196 ~ 10449349 (-)
atxn3 atxn3,LOC108423524,LOC107683100,LOC107568569,LOC107677681 coding upstream 5933 10449480 ~ 10457781 (-)
spred1 spred1 coding upstream 38626 10482173 ~ 10508229 (-)
cdin1 c9h15orf41,cunh15orf41,cssa01h15orf41,LOC103355903,LOC105897278 coding upstream 247345 10690892 ~ 10753032 (-)
stxbp6 stxbp6,LOC107723262 coding upstream 595632 11039179 ~ 11090550 (-)
LOC117598311 NA non-coding downstream 145093 10291649 ~ 10293566 (-)
G162818 NA non-coding downstream 174542 10262443 ~ 10264117 (-)
G162812 NA non-coding downstream 184446 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 588330 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 613910 9824614 ~ 9824749 (-)
G163083 NA non-coding upstream 162510 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 240511 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 835130 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 848279 11291826 ~ 11292204 (-)
G163589 NA non-coding upstream 1210793 11654340 ~ 11655134 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other downstream 21073 10404074 ~ 10417586 (-)
acyp1 acyp1 other downstream 177194 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 922208 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1373381 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 3169527 7203781 ~ 7269132 (-)
fam98b fam98b other upstream 28439 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 755590 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 952635 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1113056 11556603 ~ 11592257 (-)
trnal-cag_11 NA other upstream 1777043 12220590 ~ 12221638 (-)

Expression


Co-expression Network