ttc8 (ttc8,LOC106611037)


Basic Information

Item Value
gene id ttc8
gene name ttc8,LOC106611037
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10312078 ~ 10320949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933726.2
TTGCTGGGGGTAACGGGACGCTCGAGGTTGAGCTAAAGAAGCTTTAGCTAACTCAGCTAAGCTAAACTAGGAGCAGGAGAATTGTGGGTGCAAATATCTGACCAGAATCCGCTTCGGGGTAAAATGGAAGTGACGTTATCTATGGATCCTCTTTTTCTTGCATGGAGCTGTTTTAGGAGACGGAAGTTCCAGAAATGCTCGGATCTTTGCACAAAGGTGCTGGAGGACAATCCGTACGACCAGGCAGCTTGGAGCCTGAAGACAAGGGCTCTGACTGAGATGGTGTACATTGATGAAGTGGAAGTTGACCAGGAGGGCATTGCAGAAATAATGTTGGATGAAAGTGCCATTGCCCAAGTAGCACGACCTGGAACGTCACTGAGGCTCCCTGGAACAAGCCAGGGTGGAGGACCTACTCCAGCTGTCAGACCAGTGACCCAGTCAGGACGCCCTATTACAGGATTTGTAAGGCCCAGCACTCAGTCTGGTAGACCAGGGACAATGGAGCAAGCCATCAGAACACCTCGAACTGCAAACACTGCCCGTCCAGTCACCAGTGCTTCTGGGAGATTTGTCCGATTGGGCACGGCTTCTATGTTAACACATCCGGATGGACCGTTTATAAATTTGTCCAGATTAAATTTGGCAAAGTATGCACAGAAACCAAATTTATCCAAGACCTTATTTGAATACATCTTTCACCACGAGAACGATGTCAAAAATGCTTTGGACCTAGCTGCACTCGCTACGGAGCATGCACAGTTCAAGGACTGGTGGTGGAAAGTCCAACTTGGGAAATGTTATTATAGGCTTGGTTTGTATCGTGAAGCTGAGAAACAATTCAGATCAGCCCTCAATCATCAAGAGTTTGTAGATACTTATCTCTACCTTGCGAAGGTATATCAGCGACTGGATCAACCAATAACTGCCCTGAACCTCTTTAAACAAGGCCTGGACCATTTCCCAGGAGAAGTGACTTTGCTGACTGGGATTGCTCGCATTCATGAGGAGATGAACAACATCACTTCAGCTACAGAGTATTACAAAGATGTCCTAAAGCAGGACAACACACATGTGGAGGCCATCGCCTGTATAGGAAGCAACCATTTCTATACGGACCAGCCAGAGATCGCCTTGCGTTTCTACAGACGGTTGCTGCAGATGGGTGTGTATAACTGCCAGCTTTACAATAATCTGGGCCTGTGCTGCTTTTATGCTCAGCAGTATGACATGACTCTGTCCTCATTTGAGAGGGCATTAGCCCTGGTTTCCAGTGATGAGGAACAGGCTGACGTCTGGTATAATATTGGACATGTTGCAGTGGGTATCGGTGACTTGACTCTAGCTTATCAGTGCTTTAAACTAGCTTTGGCATTTAACAATGATCATGCTGAGGCGTACAACAACTTAGCAGTGCTGGAGCTACGCAAAGGCCACATTGAGCAGGCAAAAGCCTTTTTGCAGACAGCTGCTTCTCTCGCTCCCCACATGTATGAACCACATTTCAACTTCGCTGTACTGTCAGATAAGGTGGGTGATCTTCAGAGTAGCTACATATCTGCCCAGAAGTCAGAGGATGCTTTTCCTGAGCACGTGGACACTCAACAGATCCTGAAGACCCTCAGACAGCACTTTTCTGTGCTCTAAATTTTTCATCccaatttttttacattaaaagaaAGCTATAAAACGTTGTCAAAACATCTAGAGATTAAAATGTCTAGCCCCTTTTCAAGATTTTTATAgatataataaatttaatagatATAATAAATCACAGTGTATAATTGCAGTTTTTAACTTATAGCAAAATCTTAGAAAAAGATAGAAGTTAGAaaaagtggttttgttttgaaaatattatGTGAAACGTAAACTTGTCTGTGTttagcattaaaaatgtatagagTGCAA

Function

symbol description
ttc8 Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and establishment of pigment granule localization. Predicted to be part of BBSome. Used to study ciliopathy. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 8; and retinitis pigmentosa 51. Orthologous to human TTC8 (tetratricopeptide repeat domain 8).

NR:

description
PREDICTED: tetratricopeptide repeat protein 8 isoform X1

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060026 convergent extension biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16781 TTC8, BBS8; tetratricopeptide repeat protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933726.2 True 1914 mRNA 0.44 15 10312078 10320949

Neighbor

gene id symbol gene type direction distance location
ndc80 ndc80 coding downstream 22921 10280193 ~ 10289157 (-)
LOC113538853 nek9,LOC107724238 coding downstream 33409 10266040 ~ 10278669 (-)
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 61322 10247906 ~ 10250756 (-)
jdp2a jdp2,jdp2a,LOC107702236,LOC107701522,LOC107723272,LOC107589793 coding downstream 64930 10233971 ~ 10247148 (-)
flvcr2a flvcr2 coding downstream 81377 10214843 ~ 10230701 (-)
LOC113538709 LOC108269951,LOC108423515 coding upstream 8735 10329684 ~ 10358737 (-)
asb2b LOC108270465 coding upstream 102878 10423827 ~ 10431819 (-)
ddx24 ddx24 coding upstream 117710 10438659 ~ 10443547 (-)
si:ch1073-416d2.3 serpina10 coding upstream 124247 10445196 ~ 10449349 (-)
atxn3 atxn3,LOC108423524,LOC107683100,LOC107568569,LOC107677681 coding upstream 128531 10449480 ~ 10457781 (-)
LOC117598311 NA non-coding downstream 18512 10291649 ~ 10293566 (-)
G162818 NA non-coding downstream 47961 10262443 ~ 10264117 (-)
G162812 NA non-coding downstream 57865 10254004 ~ 10254213 (-)
G162548 LOC108269647 non-coding downstream 461749 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 487329 9824614 ~ 9824749 (-)
G163083 NA non-coding upstream 285108 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 363109 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 957728 11278677 ~ 11278892 (-)
G163414 NA non-coding upstream 970877 11291826 ~ 11292204 (-)
G163589 NA non-coding upstream 1333391 11654340 ~ 11655134 (-)
acyp1 acyp1 other downstream 50613 10259449 ~ 10261465 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 795627 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1246800 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 3042946 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 3503509 6807484 ~ 6808569 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 83125 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 151037 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 878188 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 1075233 11396182 ~ 11406751 (-)
LOC113538843 LOC108270308,LOC108423550,LOC107663156 other upstream 1235654 11556603 ~ 11592257 (-)

Expression


Co-expression Network