RNA id: XM_026933726.2


Basic Information

Item Value
RNA id XM_026933726.2
length 1914
RNA type mRNA
GC content 0.44
exon number 15
gene id ttc8
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10312078 ~ 10320949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCTGGGGGTAACGGGACGCTCGAGGTTGAGCTAAAGAAGCTTTAGCTAACTCAGCTAAGCTAAACTAGGAGCAGGAGAATTGTGGGTGCAAATATCTGACCAGAATCCGCTTCGGGGTAAAATGGAAGTGACGTTATCTATGGATCCTCTTTTTCTTGCATGGAGCTGTTTTAGGAGACGGAAGTTCCAGAAATGCTCGGATCTTTGCACAAAGGTGCTGGAGGACAATCCGTACGACCAGGCAGCTTGGAGCCTGAAGACAAGGGCTCTGACTGAGATGGTGTACATTGATGAAGTGGAAGTTGACCAGGAGGGCATTGCAGAAATAATGTTGGATGAAAGTGCCATTGCCCAAGTAGCACGACCTGGAACGTCACTGAGGCTCCCTGGAACAAGCCAGGGTGGAGGACCTACTCCAGCTGTCAGACCAGTGACCCAGTCAGGACGCCCTATTACAGGATTTGTAAGGCCCAGCACTCAGTCTGGTAGACCAGGGACAATGGAGCAAGCCATCAGAACACCTCGAACTGCAAACACTGCCCGTCCAGTCACCAGTGCTTCTGGGAGATTTGTCCGATTGGGCACGGCTTCTATGTTAACACATCCGGATGGACCGTTTATAAATTTGTCCAGATTAAATTTGGCAAAGTATGCACAGAAACCAAATTTATCCAAGACCTTATTTGAATACATCTTTCACCACGAGAACGATGTCAAAAATGCTTTGGACCTAGCTGCACTCGCTACGGAGCATGCACAGTTCAAGGACTGGTGGTGGAAAGTCCAACTTGGGAAATGTTATTATAGGCTTGGTTTGTATCGTGAAGCTGAGAAACAATTCAGATCAGCCCTCAATCATCAAGAGTTTGTAGATACTTATCTCTACCTTGCGAAGGTATATCAGCGACTGGATCAACCAATAACTGCCCTGAACCTCTTTAAACAAGGCCTGGACCATTTCCCAGGAGAAGTGACTTTGCTGACTGGGATTGCTCGCATTCATGAGGAGATGAACAACATCACTTCAGCTACAGAGTATTACAAAGATGTCCTAAAGCAGGACAACACACATGTGGAGGCCATCGCCTGTATAGGAAGCAACCATTTCTATACGGACCAGCCAGAGATCGCCTTGCGTTTCTACAGACGGTTGCTGCAGATGGGTGTGTATAACTGCCAGCTTTACAATAATCTGGGCCTGTGCTGCTTTTATGCTCAGCAGTATGACATGACTCTGTCCTCATTTGAGAGGGCATTAGCCCTGGTTTCCAGTGATGAGGAACAGGCTGACGTCTGGTATAATATTGGACATGTTGCAGTGGGTATCGGTGACTTGACTCTAGCTTATCAGTGCTTTAAACTAGCTTTGGCATTTAACAATGATCATGCTGAGGCGTACAACAACTTAGCAGTGCTGGAGCTACGCAAAGGCCACATTGAGCAGGCAAAAGCCTTTTTGCAGACAGCTGCTTCTCTCGCTCCCCACATGTATGAACCACATTTCAACTTCGCTGTACTGTCAGATAAGGTGGGTGATCTTCAGAGTAGCTACATATCTGCCCAGAAGTCAGAGGATGCTTTTCCTGAGCACGTGGACACTCAACAGATCCTGAAGACCCTCAGACAGCACTTTTCTGTGCTCTAAATTTTTCATCccaatttttttacattaaaagaaAGCTATAAAACGTTGTCAAAACATCTAGAGATTAAAATGTCTAGCCCCTTTTCAAGATTTTTATAgatataataaatttaatagatATAATAAATCACAGTGTATAATTGCAGTTTTTAACTTATAGCAAAATCTTAGAAAAAGATAGAAGTTAGAaaaagtggttttgttttgaaaatattatGTGAAACGTAAACTTGTCTGTGTttagcattaaaaatgtatagagTGCAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060026 convergent extension biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16781 TTC8, BBS8; tetratricopeptide repeat protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578983.1 lncRNA downstream 18512 10291649 ~ 10293566 (-) False LOC117598311
XR_004578982.1 lncRNA downstream 18512 10291649 ~ 10293566 (-) True LOC117598311
TU192812 lncRNA downstream 47961 10262443 ~ 10264117 (-) True G162818
TU192806 lncRNA downstream 50937 10259452 ~ 10261141 (-) False acyp1
TU192798 lncRNA downstream 57865 10254004 ~ 10254213 (-) True G162812
TU193105 lncRNA upstream 285108 10606057 ~ 10606812 (-) True G163083
XR_004579009.1 lncRNA upstream 363109 10684058 ~ 10685169 (-) True LOC117598339
TU193477 lncRNA upstream 957728 11278677 ~ 11278892 (-) True G163411
TU193480 lncRNA upstream 970877 11291826 ~ 11292204 (-) True G163414
TU193673 lncRNA upstream 1333391 11654340 ~ 11655134 (-) True G163589
XM_026933741.2 mRNA downstream 22921 10280193 ~ 10289157 (-) True ndc80
XM_034308223.1 mRNA downstream 24165 10280193 ~ 10287913 (-) False ndc80
XM_034308007.1 mRNA downstream 33409 10266040 ~ 10278669 (-) True LOC113538853
XM_026933932.2 mRNA downstream 50613 10259449 ~ 10261465 (-) True acyp1
XM_026933931.2 mRNA downstream 50708 10259449 ~ 10261370 (-) False acyp1
XM_034307936.1 mRNA upstream 8735 10329684 ~ 10358737 (-) False LOC113538709
XM_034307937.1 mRNA upstream 8735 10329684 ~ 10358732 (-) False LOC113538709
XM_026933996.2 mRNA upstream 8735 10329684 ~ 10358730 (-) False LOC113538709
XM_026933994.2 mRNA upstream 8735 10329684 ~ 10358730 (-) False LOC113538709
XM_026933995.2 mRNA upstream 8735 10329684 ~ 10358347 (-) True LOC113538709
TU192807 other downstream 50900 10259452 ~ 10261178 (-) False acyp1
TU192804 other downstream 50937 10259452 ~ 10261141 (-) False acyp1
trnal-aag_1 other downstream 102448 10209549 ~ 10209630 (-) True trnal-aag_1
trnal-aag other downstream 103870 10208127 ~ 10208208 (-) True trnal-aag
trnas-aga_11 other downstream 683604 9628393 ~ 9628474 (-) True trnas-aga_11
TU192936 other upstream 83136 10404085 ~ 10415002 (-) False LOC113538721
TU192978 other upstream 151037 10471986 ~ 10473982 (-) False fam98b
TU193430 other upstream 878188 11199137 ~ 11216157 (-) False bmp4
trnay-gua_1 other upstream 953610 11274559 ~ 11274647 (-) True trnay-gua_1
TU193515 other upstream 1075233 11396182 ~ 11406751 (-) True LOC113538914

Expression Profile