G162812


Basic Information

Item Value
gene id G162812
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10254004 ~ 10254213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU192798
gttcctcacaattagactggatgcatttctctgtaaattggcagacaaaatgtttctgaattcattctgctgctaccatcatgagttaaatcatcaataaagattagtgaccCCTtttcagaagcagccatgcaagcccaagccatgacactacctccaccatgcttgactgatgagtttgtatgttttggatcatgagcagatcctttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192798 True 210 lncRNA 0.41 1 10254004 10254213

Neighbor

gene id symbol gene type direction distance location
fosaa LOC108269548,LOC108423428,LOC107702235 coding downstream 3248 10247906 ~ 10250756 (-)
jdp2a jdp2,jdp2a,LOC107702236,LOC107701522,LOC107723272,LOC107589793 coding downstream 6856 10233971 ~ 10247148 (-)
flvcr2a flvcr2 coding downstream 23303 10214843 ~ 10230701 (-)
trnal-aag_1 NA coding downstream 44374 10209549 ~ 10209630 (-)
trnal-aag NA coding downstream 45796 10208127 ~ 10208208 (-)
LOC113538853 nek9,LOC107724238 coding upstream 11827 10266040 ~ 10278669 (-)
ndc80 ndc80 coding upstream 25980 10280193 ~ 10289157 (-)
ttc8 ttc8,LOC106611037 coding upstream 57865 10312078 ~ 10320949 (-)
LOC113538709 LOC108269951,LOC108423515 coding upstream 75471 10329684 ~ 10358737 (-)
asb2b LOC108270465 coding upstream 169614 10423827 ~ 10431819 (-)
G162548 LOC108269647 non-coding downstream 403675 9843776 ~ 9850329 (-)
G162545 NA non-coding downstream 429255 9824614 ~ 9824749 (-)
G162514 NA non-coding downstream 632319 9621382 ~ 9621685 (-)
LOC117598277 NA non-coding downstream 665702 9586707 ~ 9588302 (-)
G162497 NA non-coding downstream 704424 9549342 ~ 9549580 (-)
G162818 NA non-coding upstream 8230 10262443 ~ 10264117 (-)
LOC117598311 NA non-coding upstream 37436 10291649 ~ 10293566 (-)
G163083 NA non-coding upstream 351844 10606057 ~ 10606812 (-)
LOC117598339 NA non-coding upstream 429845 10684058 ~ 10685169 (-)
G163411 NA non-coding upstream 1024464 11278677 ~ 11278892 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 737553 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 1188726 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 2984872 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 3445435 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 3901350 6301534 ~ 6352654 (-)
acyp1 acyp1 other upstream 5236 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 149861 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 217773 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 944924 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 1141969 11396182 ~ 11406751 (-)

Expression


Co-expression Network