G160463


Basic Information

Item Value
gene id G160463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 6726541 ~ 6726752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU190146
GTAAAATGTAGGATGAAAAATAATGGAAGAAATGGAaggtcaaacaaacaaacaaacaaataaataaataaatagccaaaTGAGGTTCCTTTTGGTGTctagttttacagtaaaattgacattactgtatattttactgtattacaatataaaataaggTTCTCTGGGACAATATAATCTGCcagtaatgtaaatattttgctaGAAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190146 True 212 lncRNA 0.27 1 6726541 6726752

Neighbor

gene id symbol gene type direction distance location
smoc1 smoc1 coding downstream 19014 6649979 ~ 6707527 (-)
LOC113545082 LOC108269854,LOC107600659,LOC107664420,LOC108423421,LOC105893120,LOC100334818 coding downstream 83963 6635832 ~ 6642578 (-)
LOC113545117 NA coding downstream 99212 6618472 ~ 6627329 (-)
ythdf2 ythdf2,LOC107721611,LOC107697702,LOC107654833 coding downstream 208873 6505620 ~ 6517668 (-)
si:ch1073-358c10.1 msra,si:ch1073-358c10.1,LOC107590893,LOC107697700 coding downstream 246727 6440421 ~ 6479814 (-)
plekhd1 plekhd1 coding upstream 811 6727563 ~ 6742566 (-)
slc39a9 slc39a9,LOC107731991 coding upstream 18150 6744902 ~ 6755813 (-)
LOC113544987 lrfn2,LOC107754970,LOC107703608 coding upstream 624703 7351455 ~ 7460776 (-)
supt7l supt7l,LOC107737450,LOC107553729,LOC107726086,LOC107656753,LOC107697525 coding upstream 1000199 7726951 ~ 7731027 (-)
si:dkey-16j16.4 LOC108270219,LOC108423460 coding upstream 1021059 7747811 ~ 7776924 (-)
G160269 NA non-coding downstream 527398 6167200 ~ 6199143 (-)
G160268 NA non-coding downstream 582379 6143897 ~ 6144162 (-)
LOC117598232 NA non-coding downstream 634970 6087221 ~ 6091571 (-)
G160058 NA non-coding downstream 732552 5991920 ~ 5993989 (-)
G160012 NA non-coding downstream 774738 5949126 ~ 5951803 (-)
G160480 NA non-coding upstream 26958 6753710 ~ 6753996 (-)
G161062 NA non-coding upstream 655655 7382407 ~ 7382623 (-)
G161118 NA non-coding upstream 875209 7601961 ~ 7602174 (-)
G161239 NA non-coding upstream 976987 7703739 ~ 7703967 (-)
G161337 NA non-coding upstream 1226316 7953068 ~ 7953637 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 373887 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 545863 6100665 ~ 6180678 (-)
ncmap NA other downstream 715553 5994040 ~ 6010988 (-)
eno4 eno4 other downstream 990800 5725070 ~ 5735741 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other downstream 1785226 4936094 ~ 4941315 (-)
G160645 LOC108270426 other upstream 80732 6807484 ~ 6808569 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other upstream 477029 7203781 ~ 7269132 (-)
LOC113545095 NA other upstream 2333731 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 2764465 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 3532697 10259449 ~ 10261465 (-)

Expression


Co-expression Network