LOC117598359


Basic Information

Item Value
gene id LOC117598359
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 8837517 ~ 8842741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308376.1
CTTCCAGAcattttgaaacaaaacaaaaaaaatacacctgGTAACAACGTCAGCTTATGTAATTCTCCAGATGTGATGCAGGGTGAACTAGCACAGGGTCCCACCCCATTGCTGAGTAACAGGCTTTTTCAGTATTGAGCTCTAGTTACTACATAGTTACTTTATACTGCATGTTGTGCTAATTAACACgatgcatttgcattttactCTTTTTATTCTGACAGTACACTGGTTTTCAAATATATGTAAGCCAATAATGTGATGAATTCAGTATTATTGAGAACTTTTACAACAGCAATATCAagctaattacattttttaatatattccCAGGCTTGCAGCTCATACAGGTCCAACAGGACCCAAGTGAACTGGTTCTTTCCAAAGGATCATCGGTGAAGGTCTCCTGCTCTGTAACTGGAATGAGTAGTCAAGTCCTATACTGGTATCACTGGAATGAGACAGCAGGGTTCACACTGGTCTTCACCTCTACTGCTGTTGGTTCAGTGAATCCACCCAGTGAAGGCATGCAGCTCATACAGGTCCAACAGGACCCAAGCGACCTGGTTCTTGCCACAGGATCATCACTGAAGGTCTCCTGCTCTGTAATGGGCATGAGTAGTCCAAACCTGTACTGGTACCACTGGAATGAAACAGCAGGGTTCACACTGGTCTTCACCTCTTTTGCTACTGGTACAGTGAATCCACCCAgtCTGCAGATCATACAAGTCCATCAGGAACCAGAGGACCTGGTTCTTTCCCCTGGATCATCGCTGAAGATATCCTGTTCTATAACTGGCATGAGTAATCCAAACCTATACTGGTACCACTGGAATGAAACAGCAGAGTTCACACTGGTCTTCACCTCAGTGGGTACTGGAATGATGGACCCAGCCAGTGACGGTCAGTTTAAATCTCACAGACCTGACGGGCTTAATATTGTTCTGGAGtctgatggagtgagtgagatCGGCTCTGCAGTGTGGTACTGTGCAGCCAGTCCCCACAGCATCCCAGTGTCATCacagagctgtacaaaaaccacaacaagTCATTAGAGTGAGCTTCTGCTAAAATAGCTAGCtatgaatacattttatattgtccAACACTATGACTTTAACTAAAAACCATAAAATATCCA
>XM_034308377.1
CTTCCAGAcattttgaaacaaaacaaaaaaaatacacctgGTAACAACGTCAGCTTATGTAATTCTCCAGATGTGATGCAGGGTGAACTAGCACAGGGTCCCACCCCATTGCTGAGTAACAGGCTTTTTCAGTATTGAGCTCTAGTTACTACATAGTTACTTTATACTGCATGTTGTGCTAATTAACACgatgcatttgcattttactCTTTTTATTCTGACAGTACACTGGTTTTCAAATATATGTAAGCCAATAATGTGATGAATTCAGTATTATTGAGAACTTTTACAACAGCAATATCAagctaattacattttttaatatattccCAGGCTTGCAGCTCATACAGGTCCAACAGGACCCAAGTGAACTGGTTCTTTCCAAAGGATCATCGGTGAAGGTCTCCTGCTCTGTAACTGGAATGAGTAGTCAAGTCCTATACTGGTATCACTGGAATGAGACAGCAGGGTTCACACTGGTCTTCACCTCTACTGCTGTTGGTTCAGTGAATCCACCCAGTGAAGGCATGCAGCTCATACAGGTCCAACAGGACCCAAGCGACCTGGTTCTTGCCACAGGATCATCACTGAAGGTCTCCTGCTCTGTAATGGGCATGAGTAGTCCAAACCTGTACTGGTACCACTGGAATGAAACAGCAGGGTTCACACTGGTCTTCACCTCTTTTGCTACTGgtCTGCAGATCATACAAGTCCATCAGGAACCAGAGGACCTGGTTCTTTCCCCTGGATCATCGCTGAAGATATCCTGTTCTATAACTGGCATGAGTAATCCAAACCTATACTGGTACCACTGGAATGAAACAGCAGAGTTCACACTGGTCTTCACCTCAGTGGGTACTGGAATGATGGACCCAGCCAGTGACGGTCAGTTTAAATCTCACAGACCTGACGGGCTTAATATTGTTCTGGAGtctgatggagtgagtgagatCGGCTCTGCAGTGTGGTACTGTGCAGCCAGTCCCCACAGCATCCCAGTGTCATCacagagctgtacaaaaaccACAACTGTTCAGTAGGAATATAACTACCATCATATACACATTTTTGCATGCATTTCACATTGTTAAGATCACAGGACAGTGTGAAGCTCTTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308376.1 True 1144 mRNA 0.43 4 8837517 8842741
XM_034308377.1 False 1120 mRNA 0.44 3 8839732 8842741

Neighbor

gene id symbol gene type direction distance location
LOC113545107 LOC108269987,LOC108423399 coding downstream 310570 8330025 ~ 8526947 (-)
LOC113545037 zdhhc14,LOC105897223 coding downstream 511387 8273235 ~ 8326130 (-)
LOC113545103 LOC108270188 coding downstream 666347 8153983 ~ 8171170 (-)
daam2 daam2 coding downstream 759458 7959349 ~ 8078059 (-)
rbks rbks coding downstream 1000222 7799917 ~ 7837295 (-)
LOC117598356 NA coding upstream 22512 8865253 ~ 8867511 (-)
LOC117598341 NA coding upstream 215222 9057963 ~ 9059808 (-)
paplna papln,LOC107570257 coding upstream 227622 9070363 ~ 9095460 (-)
psen1 psen1,LOC108269999,LOC108423477 coding upstream 260868 9103609 ~ 9115082 (-)
trappc12 trappc12 coding upstream 281970 9124711 ~ 9150730 (-)
G162049 NA non-coding downstream 80951 8750244 ~ 8756566 (-)
G162041 NA non-coding downstream 93110 8687151 ~ 8744407 (-)
G162048 NA non-coding downstream 115557 8693918 ~ 8721960 (-)
G161724 NA non-coding downstream 257396 8579163 ~ 8580121 (-)
G161587 NA non-coding downstream 509121 8237423 ~ 8328396 (-)
G162068 NA non-coding upstream 62917 8905658 ~ 8914686 (-)
G162187 NA non-coding upstream 368151 9210892 ~ 9211149 (-)
G162268 NA non-coding upstream 498799 9341540 ~ 9341981 (-)
G162279 NA non-coding upstream 553514 9396255 ~ 9396972 (-)
G162497 NA non-coding upstream 706601 9549342 ~ 9549580 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1568385 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 2028948 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2484863 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2656839 6100665 ~ 6180678 (-)
ncmap NA other downstream 2826529 5994040 ~ 6010988 (-)
LOC113545095 NA other upstream 217742 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 648476 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1416708 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1561333 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1629245 10471986 ~ 10479042 (-)

Expression


Co-expression Network