trappc12 (trappc12)


Basic Information

Item Value
gene id trappc12
gene name trappc12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 9124711 ~ 9150730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934025.2
GTTTACTCCAGTCTTCTGTGTGCCTTGTAGGCATGCGCGTGATAGtggtgcgcatgcgcagtgcgaGTAGGTTCGGTTAGTGACAGCTAGACTCGAAGGCGAGAGCCATGGATAGTGGTGAGGATGCAGCTCAAAGGCCTTCGACTCTAGATCTAGCCGGACTAGAGAAAGACGTTCCGGCAGTCCAAGCACCTTCAGACGCCGCCGCTATGAGCAGTCACCCCGACACTACAGACGCTCTCTTCCAAGAGGAGAGCATTGACCTGGACGTAGAAGCGTTCATCTCCCCTCAGGATGACAGCAATGCTTCTGTGAGCGTCACGGATAAGCTGAACGATCAGATGATGGAGAGCGTCATGATCTCCGATTCCCCCAACAGTGAAGAGGAAGATGTTCCTATTGACTCTCTGTTAGAGCAAACAGATGACAAGGAGTCCCTTGACTCCAAAGAGCCtgaagaagatgaagagaaTGACCCaaaagaggagaaggaggaggctGGAACTGAACAGGCCACACCTGATGATACTGTTGAATCTGAAATGTCTCCAGCTTTagctgaaaaggagaaaacagaggaaaatGATAAGGACAGCACAAAGGAGGCTGTTACAGGCACGGTGCCTGCTCCAAGCAGCCCCAAAGCTGAGGAAACGGAGCTTGAAATAGCCAAGCATGTGATTAAAGACGAGCCCATTCCAGTGTGCACTATTTTCAGCCAAGCCATGCAGAATAAAGCACAGTCCCTGGTGCCTGATGGATTTCAGCCGACTTTGGTCAAATCCCCGAGCTTTACAACTGGCCATAATGAAACTCCCAATAAACTAGTGCCTCTGGTATCTCAGCCCAGTCCCAGTCTCAGTAAATTCTTCACTGATAATGGCACTGTTAACCCCGCCTCAGACTTCTTTGACTCCTTCACAACATCCTCATCTTTCATTTCAGTTAGCAACCCAAACGCAGAGACACCGAAGTCCCCAGCCCCTCCTGAGCGCCAGCTTTCTTCAGGCTCAAGCAGCCTTCTTCAAGATGGAGGCACAGCCAGTACTTACTTCAGTCCGGCTCCTCCCGAGAGCACACCGAGGCCTGTGACAGGCCCTGCAGAACCTGTAGTGACTATTAGTAAGCTGCAAGCGGTATTCTCAGGCAGCGATGATCCGTTTGCGAGTGCTCTGAGTATGAGCGAAGTGGACAGACGATATGACGCCTGGCTTCCCTCTGAGGAGACCAGGAGAGTTCTGATCTCTGTGGCCACTCAGCAGGTCAACCCTGTGCATGTAGATAGGGAGAGGCTATCCATGCCCGGACTCAAGTTTGACAATTTGCAGGGTGATGCAGTGAAGGACCTGATGCTGCGTTTCCTTGGAGACCAGGCAGCGACGAAGAGGCAAGTTCTCACTGCTAACTCAGTGGAGCAGAACTTCTTGGGTCTCAAGCAGCTGATCGGCACAAAGAACTGGAGGGCAGCTGTGGACCTGACGGGCAGACTGCTGACGGCTCACGGCCAAGGCTATGGCAAGAGCGGCCAGCCGAGCACCCACACCACCGACACGCTGCAGTTATGGTTTGTGCGTCTGGCTCTGTTGGTTAAGCTCAACCTCTTCCAAAATGCCGAGCTGGAGTTTGAGCCGTTTGGTAATCTGGACCAGCCGGACCTTTACTACGAGTACTACCCTACAGTGTACCCTGGAAGACGAGGTTCGATGGTACCGTTCTCCATGCGTGTGCTGCATGCTGAACTGCCTCAGTACTTAAACAAGCCCCAGGAGTCTCTGGACCGCTTGCACAGCATGAGAAGCATCTGTCAGAAAATCCTGGCTAACCTGGAGGAAGGACTGGCTGAGGACGGGAGCATGATGACTCTCACTCAGGAAAACAGACAAGcCTCTATTCAGCTGTGGAGGTCACGTCTGTGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTAATGATGAAGGACTATGTGCTGGCTGTTGAGACATATTACTCCATCATCCAGTATGAGCCACAGCAGAGAGTGCAGCTGTTGAGTGGAATAGGACGCATCTTCCTACAGATTGGAGACATCAGAACTGCAGAGAAGTATTTCCAGGAAGTAGAGAAAGCTggtgaggaaaaaggaaaaggacCAACTCATGACACGGCTATTTTAATGAACAGggcaTTTGTGTACCTGAGCCAGAATAATTATGCAGACGCCCACACGTGTTTCTCCAGCGTCTTGAAAATTGATCCCAACAATCCTGTGGCGAACAACAACGCAGCAGTGTGCTTACTTTATTTGGGCCGCCTAAAGGAGTCTCTGGGTCAGCTGGAGAGCCTGGTGCAGCAGGACCCTGCGCTCTACCTGCATGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAATCATCACGCAGCACGCAGAAGAAACAGGCTCTGCTGGAGGCTGTGGCCGGGCGCGAGGGCGACAGCTTCAACACGCAGTGCCTCAAACTGGTGTAACTAATCACCAACCAGGAGTGCGTTAGATCTCTGTTTCACTGCTTCATGATGTGACATGAGCTTCattaacaagattttttttttttttaagaagactTTGTAATGTTATGTGTGACCAAAATCAAAGCTGACCTGAAATGACATGTATTCACACTAATGTATGTGATGCATTTGGAACTCTTAACCCAATGTTTCTATGCTATCAGGTTGCAGGGGAATGTAAATAGAGAAAGaatataaaatcaattttaaaaaaaagacattaatgtaaatatttagcaTATGTAAAGGAGATAGCCTGAGTGGGATACAGCATTACAGAAATTACAGTTTGGACACAGttctcaaaaaataaataaataaatacattgtaaAGGGTAGACAACTCAGTAGCCTGTGTGCCAGATTTTATATCTGGGCtatcagttttttatttgtgtttatgctTCCtttgagacacgtgaagccagccgtCTGCATCTTTTCtaactgctgttcatgctgcaatgcagggcagcgtaacacactcagag

Function

symbol description
trappc12 Predicted to be part of TRAPP complex. Predicted to be active in Golgi apparatus. Orthologous to human TRAPPC12 (trafficking protein particle complex subunit 12).

NR:

description
PREDICTED: trafficking protein particle complex subunit 12 isoform X1

GO: NA

KEGG:

id description
K20309 TRAPPC12; trafficking protein particle complex subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934025.2 True 3025 mRNA 0.49 12 9124711 9150730

Neighbor

gene id symbol gene type direction distance location
psen1 psen1,LOC108269999,LOC108423477 coding downstream 9629 9103609 ~ 9115082 (-)
paplna papln,LOC107570257 coding downstream 29251 9070363 ~ 9095460 (-)
LOC117598341 NA coding downstream 64903 9057963 ~ 9059808 (-)
LOC117598356 NA coding downstream 257200 8865253 ~ 8867511 (-)
LOC117598359 NA coding downstream 281970 8837517 ~ 8842741 (-)
ccr6b LOC108269430 coding upstream 258506 9409236 ~ 9414543 (-)
atp6v1c2 atp6v1c2 coding upstream 268480 9419210 ~ 9428518 (-)
LOC113538930 NA coding upstream 386153 9536883 ~ 9548545 (-)
hs1bp3 hs1bp3 coding upstream 469206 9619936 ~ 9628414 (-)
trnas-aga_11 NA coding upstream 477663 9628393 ~ 9628474 (-)
LOC117598368 NA non-coding downstream 207100 8739435 ~ 8917611 (-)
G162068 NA non-coding downstream 210025 8905658 ~ 8914686 (-)
G162067 NA non-coding downstream 211708 8744467 ~ 8913003 (-)
G162049 NA non-coding downstream 368145 8750244 ~ 8756566 (-)
G162041 NA non-coding downstream 380304 8687151 ~ 8744407 (-)
G162187 NA non-coding upstream 60162 9210892 ~ 9211149 (-)
G162268 NA non-coding upstream 190810 9341540 ~ 9341981 (-)
G162279 NA non-coding upstream 245525 9396255 ~ 9396972 (-)
G162497 NA non-coding upstream 398612 9549342 ~ 9549580 (-)
LOC117598277 NA non-coding upstream 435977 9586707 ~ 9588302 (-)
LOC113545095 NA other downstream 59433 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1855579 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 2316142 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2772057 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2944033 6100665 ~ 6180678 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 340487 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1108719 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1253344 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1321256 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 2048407 11199137 ~ 11216157 (-)

Expression


Co-expression Network