hs1bp3 (hs1bp3)


Basic Information

Item Value
gene id hs1bp3
gene name hs1bp3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 9619936 ~ 9628414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934412.2
GGTTCGAATCCTGCCGACTACGAGTTGCCTTTTTCACTGTGTAATATTTAGTATGCgttttgtaaacttttttttagagAGTCATAAGCAAATATACAAATTAACCTTAATTCCACAGAATTACAGCGCGTTATTATTAACAGCTTCGCCAGTCAATCCATCAACAGtttgcttgctagctaagttGAATGCTAACTCAGAGGAAAAACTGAGTCAGTCCCGTGACTTAGCCACAAGCTAGTCACTTCTACCGCCTGGGTAATAGCTGCCTGTATACGTTCCTGTCACAAGATTTATTCAAAGGGCGTGAAGGAAATGATAATGAcgcttttttaataaatttgaaacATTCACCAGTAACGTTACACCGTTCAGTAATGCCAGATGGACTTGTTACGAGCAGgCCTCTGCAGAATGAGGCTACAGGTATTGACCTGCAGGTTCCGCTGTATCAGGAGGTGCGGGGTCCCATGATGACGGGCCACGTGGAGTACCAGATTGTGGTGATCACCCGCCTCGCACCCTTCAAATCTGCTAAACACAAACCAGGAGATGTTGTCCAGCTTGTGGTGTCAAAGAAGTACAGTGAAATCGATGAGTTTTACTCCAGCTTGACTGCTCAGTATCCCAGCATCCATCTGCCTGCCATGCCCCGCAAAGCGCTCTTTGTGGGAGAAACAGACATCCGCGAATGGCGAGTAGCCTTCGATGAGCTTGTCCGCTTTATTTCCAAACATCCGACTCTCTCTACCTGTCCAGAGCTAATGGAATTCTTAGGAGCAAAAGGGGCACTTCATGATGTGAAAGCCTCCAATACCCCTGACGTAGCGGAGGACGAAAATGAAGACGATGGGTTGGATTTCTTCGGAAAAGATGAGGCACCTACCACTCAGCCTGAGCGAGTGAATAAGCCAGTGAAAGTAGAAAAGGCACCTGAggagaaggaagaagaggaagaggaattGTTTGACCCCTTAGGCAGTGTTAGGTCTAAGAAGCCTAAGCCTGCCAAGCCAGCACCAAAACCTGCAGCTAAACCCAAACTCTCTCTGtttgatgaggaggatgatCCAGACAAGGAGCTTTTTCAGCCTGCGGTAAAGAGCAGTGATGTGAAATTGTTTGAGGACCCGGATTTAGGTGGAACTGTTTCTCTTGGAGACTCTTTGCTGCTCCCTAATGCCTACCGGAAGAGTGAATCCTCTGCTATCACTAAACTGGATGAAGATGTGGATGATCTCTTTAGGGTGGAGGAGGATTTGGACAAACTTCTAGCGATCAGTAAACCAGTGCAACCAAAGCCAGCTGTTGCTCCGAAACCAGCAGTGAAAGCCAAGCCAGTAATTCCACAGAAGCCCTCCTCTGTGGCACAGACTGGCCGAGCGCCTCCTCAGCCTGCCGTGGTCCAGGCAATGGATCAGCACGACATCCTAAAGTATATCCAACAGAACGAGGCTGCAGCCAATGAGGACCTGGACCTTTTTTAGCTTTGTTGTTCAGGGATAAGCCAGGTAAAACATTTCAGCATAATGACACTAAATCATTCTTCTGCTAATCTTCATCTCAGTTTAGACACTATCACAAGGACAGGAGTTTTTTCCTGACAAGTTGTTGCCTTCAGACTAAATTTGGTGctcttttgtaaatttttttcacCTTATTCACCTCAGATCAGAGGTCTTCAGAGTTTCCAGCTAACCGTGACCTTCAAACCAAACAGCTGATTATCATGCTGAAATGAGCCCCGTATTTTGCACATTGATCCTAATTACACAGTGCACTAATGCAGTAATGTGCAGTTTTAATGAACTTCAGTATCATAATGACTATAGCATTGTTTTTTGCATGTAATGACATCCTACCATTAatcaatttataatatataattcataATATAAATTGGCTAAGAGTAAGATGTCATTATATGCCATCCTGTGTTATTATTACATTAGATTGTAGGGACTCACAATGAAGGAAAGAACCTTAATAAAAATTCCTTTGACAATATGCAATTATTTTGACAACATGGCACTTATTTTGATAATGTACATTTGTACACTGGTgagctgatttgattttgaTGTTGGAAATTATGGTAATCTTTCCAATAagaatgatattattattattattattattattattattattattattattattattatcatcatcatcatcatcatcattattattgttattattattgcaaattTGTTTAATGGCATATAGAtaacactttacattttttGATTTGTGTAGCTGTAAAGTAATTTTTATAcctaaaaaatgtttatatactcAATAAACACTTGTACTTTG
>XM_026934413.2
ATGCCAGATGGACTTGTTACGAGCAGgCCTCTGCAGAATGAGGCTACAGGTATTGACCTGCAGGTTCCGCTGTATCAGGAGGTGCGGGGTCCCATGATGACGGGCCACGTGGAGTACCAGATTGTGGTGATCACCCGCCTCGCACCCTTCAAATCTGCTAAACACAAACCAGGAGATGTTGTCCAGCTTGTGGTGTCAAAGAAGTACAGTGAAATCGATGAGTTTTACTCCAGCTTGACTGCTCAGTATCCCAGCATCCATCTGCCTGCCATGCCCCGCAAAGCGCTCTTTGTGGGAGAAACAGACATCCGCGAATGGCGAGTAGCCTTCGATGAGCTTGTCCGCTTTATTTCCAAACATCCGACTCTCTCTACCTGTCCAGAGCTAATGGAATTCTTAGGAGCAAAAGGGGCACTTCATGATGTGAAAGCCTCCAATACCCCTGACGTAGCGGAGGACGAAAATGAAGACGATGGGTTGGATTTCTTCGGAAAAGATGAGGCACCTACCACTCAGCCTGAGCGAGTGAATAAGCCAGTGAAAGTAGAAAAGGCACCTGAggagaaggaagaagaggaagaggaattGTTTGACCCCTTAGGCAGTGTTAGGTCTAAGAAGCCTAAGCCTGCCAAGCCAGCACCAAAACCTGCAGCTAAACCCAAACTCTCTCTGtttgatgaggaggatgatCCAGACAAGGAGCTTTTTCAGCCTGCGGTAAAGAGCAGTGATGTGAAATTGTTTGAGGACCCGGATTTAGGTGGAACTGTTTCTCTTGGAGACTCTTTGCTGCTCCCTAATGCCTACCGGAAGAGTGAATCCTCTGCTATCACTAAACTGGATGAAGATGTGGATGATCTCTTTAGGGTGGAGGAGGATTTGGACAAACTTCTAGCGATCAGTAAACCAGTGCAACCAAAGCCAGCTGTTGCTCCGAAACCAGCAGTGAAAGCCAAGCCAGTAATTCCACAGAAGCCCTCCTCTGTGGCACAGACTGGCCGAGCGCCTCCTCAGCCTGCCGTGGTCCAGGCAATGGATCAGCACGACATCCTAAAGTATATCCAACAGAACGAGGCTGCAGCCAATGAGGACCTGGACCTTTTTTAGCTTTGTTGTTCAGGGATAAGCCAGATCAGAGGTCTTCAGAGTTTCCAGCTAACCGTGACCTTCAAACCAAACAGCTGATTATCATGCTGAAATGAGCCCCGTATTTTGCACATTGATCCTAATTACACAGTGCACTAATGCAGTAATGTGCAGTTTTAATGAACTTCAGTATCATAATGACTATAGCATTGTTTTTTGCATGTAATGACATCCTACCATTAatcaatttataatatataattcataATATAAATTGGCTAAGAGTAAGATGTCATTATATGCCATCCTGTGTTATTATTACATTAGATTGTAGGGACTCACAATGAAGGAAAGAACCTTAATAAAAATTCCTTTGACAATATGCAATTATTTTGACAACATGGCACTTATTTTGATAATGTACATTTGTACACTGGTgagctgatttgattttgaTGTTGGAAATTATGGTAATCTTTCCAATAagaatgatattattattattattattattattattattattattattattattattatcatcatcatcatcatcatcattattattgttattattattgcaaattTGTTTAATGGCATATAGAtaacactttacattttttGATTTGTGTAGCTGTAAAGTAATTTTTATAcctaaaaaatgtttatatactcAATAAACACTTGTACTTTG

Function

symbol description
hs1bp3 Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within negative regulation of autophagy. Human ortholog(s) of this gene implicated in essential tremor 2. Orthologous to human HS1BP3 (HCLS1 binding protein 3).

NR:

description
HCLS1-binding protein 3

GO: NA

KEGG:

id description
K24094 HS1BP3; HCLS1-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934412.2 True 2322 mRNA 0.41 7 9619936 9628414
XM_026934413.2 False 1786 mRNA 0.42 8 9619936 9628037

Neighbor

gene id symbol gene type direction distance location
LOC113538930 NA coding downstream 71391 9536883 ~ 9548545 (-)
atp6v1c2 atp6v1c2 coding downstream 191418 9419210 ~ 9428518 (-)
ccr6b LOC108269430 coding downstream 205393 9409236 ~ 9414543 (-)
trappc12 trappc12 coding downstream 469206 9124711 ~ 9150730 (-)
psen1 psen1,LOC108269999,LOC108423477 coding downstream 504854 9103609 ~ 9115082 (-)
LOC113538936 ltbp2 coding upstream 5652 9634066 ~ 9750374 (-)
arel1 arel1,LOC107573237,LOC107672354 coding upstream 161330 9789744 ~ 9805652 (-)
angel1 angel1 coding upstream 196758 9825172 ~ 9835028 (-)
dlst dlst,LOC107092408,LOC103357959,LOC102784039,LOC108236193,LOC105916992 coding upstream 238663 9867077 ~ 9877765 (-)
esrrb esrrb,LOC107678144 coding upstream 311250 9939664 ~ 9993316 (-)
LOC117598277 NA non-coding downstream 31634 9586707 ~ 9588302 (-)
G162497 NA non-coding downstream 70356 9549342 ~ 9549580 (-)
G162279 NA non-coding downstream 222964 9396255 ~ 9396972 (-)
G162268 NA non-coding downstream 277955 9341540 ~ 9341981 (-)
G162187 NA non-coding downstream 408787 9210892 ~ 9211149 (-)
G162545 NA non-coding upstream 196200 9824614 ~ 9824749 (-)
G162548 LOC108269647 non-coding upstream 215362 9843776 ~ 9850329 (-)
G162812 NA non-coding upstream 625590 10254004 ~ 10254213 (-)
G162818 NA non-coding upstream 634029 10262443 ~ 10264117 (-)
LOC117598311 NA non-coding upstream 663235 10291649 ~ 10293566 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other downstream 103485 9491217 ~ 9516451 (-)
LOC113545095 NA other downstream 554658 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 2350804 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 2811367 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 3267282 6301534 ~ 6352654 (-)
acyp1 acyp1 other upstream 631035 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 775660 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 843572 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 1570723 11199137 ~ 11216157 (-)
LOC113538914 csgr16h14orf132,LOC108269530,LOC108423442,LOC108413331,LOC104942337 other upstream 1767768 11396182 ~ 11406751 (-)

Expression


Co-expression Network