G162268


Basic Information

Item Value
gene id G162268
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 9341540 ~ 9341981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU192163
TTTTTGAGAAGAGGTCGAGTACTCACAGGATAGAGGTCTGAGGCGAGACGCTGGGCACCGTTTCCAGGTTTAAGTGCATACATCTGACTGTGGTGCGGAAACACAGACAGCGGCTCGGACACGACAGAACCGGAACCGGAGCCGGTGCCAGAACTAACACACCGAGCACACTGATAACCCAAGGCAAGGCTCGGTCCGTCCACAGCGCCATGACCAACTGCTAAACCTCCGGAGCATGAACACACACGGTCCGGTCAGCCTGCTCCTGCCCACTACACCCTGCAGCGGTTCAGCTGGAAATGCACATAcactgactctctctcactcacacacacacacacacacacacacacacacacacacactcactctctctctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192163 True 384 lncRNA 0.55 3 9341540 9341981

Neighbor

gene id symbol gene type direction distance location
trappc12 trappc12 coding downstream 190810 9124711 ~ 9150730 (-)
psen1 psen1,LOC108269999,LOC108423477 coding downstream 226458 9103609 ~ 9115082 (-)
paplna papln,LOC107570257 coding downstream 246080 9070363 ~ 9095460 (-)
LOC117598341 NA coding downstream 281732 9057963 ~ 9059808 (-)
LOC117598356 NA coding downstream 474029 8865253 ~ 8867511 (-)
ccr6b LOC108269430 coding upstream 67255 9409236 ~ 9414543 (-)
atp6v1c2 atp6v1c2 coding upstream 77229 9419210 ~ 9428518 (-)
LOC113538930 NA coding upstream 194902 9536883 ~ 9548545 (-)
hs1bp3 hs1bp3 coding upstream 277955 9619936 ~ 9628414 (-)
trnas-aga_11 NA coding upstream 286412 9628393 ~ 9628474 (-)
G162187 NA non-coding downstream 130391 9210892 ~ 9211149 (-)
LOC117598368 NA non-coding downstream 423929 8739435 ~ 8917611 (-)
G162068 NA non-coding downstream 426854 8905658 ~ 8914686 (-)
G162067 NA non-coding downstream 428537 8744467 ~ 8913003 (-)
G162049 NA non-coding downstream 584974 8750244 ~ 8756566 (-)
G162279 NA non-coding upstream 54274 9396255 ~ 9396972 (-)
G162497 NA non-coding upstream 207361 9549342 ~ 9549580 (-)
LOC117598277 NA non-coding upstream 244726 9586707 ~ 9588302 (-)
G162514 NA non-coding upstream 279401 9621382 ~ 9621685 (-)
G162545 NA non-coding upstream 482633 9824614 ~ 9824749 (-)
LOC113545095 NA other downstream 276262 9060483 ~ 9065278 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 2072408 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 2532971 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2988886 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 3160862 6100665 ~ 6180678 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 149236 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 917468 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1062093 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1130005 10471986 ~ 10479042 (-)
bmp4 bmp4,LOC107701526,LOC107723271 other upstream 1857156 11199137 ~ 11216157 (-)

Expression


Co-expression Network