G162041


Basic Information

Item Value
gene id G162041
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 8687151 ~ 8744407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU191898
tttctttctagcccagagtGCAGATTTATGCAGACTATCAGGACAGAGGGCACTGGTCAGGAAGCTGAATAGTTTAGGCCTGTGCAATTCCATCTGCAAGTGGGTGCTGTCTGCAAAGAGCCAAACTCTGGTTCACTACTGGCTGTGGTGTACACGATGAACTCCATACTCTCTCCTTGGCGCTGTCTGTACCAGTACATCTGATAATAGCTGCCACCTTTATTATGACTGCAGTTCATTTCAGCATCTTCTCCTTTCAGATGCCAGAAAACACTGGGGTTTTGGGTGACTCCATTCTCTCCTGCTAAAA

Function

GO:

id name namespace
GO:0042398 cellular modified amino acid biosynthetic process biological_process
GO:0006749 glutathione metabolic process biological_process
GO:0006750 glutathione biosynthetic process biological_process
GO:0044272 sulfur compound biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0006575 cellular modified amino acid metabolic process biological_process
GO:0004032 alditol molecular_function
GO:0004033 aldo-keto reductase (NADP) activity molecular_function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191898 True 310 lncRNA 0.47 3 8687151 8744407

Neighbor

gene id symbol gene type direction distance location
LOC113545107 LOC108269987,LOC108423399 coding downstream 160204 8330025 ~ 8526947 (-)
LOC113545037 zdhhc14,LOC105897223 coding downstream 361021 8273235 ~ 8326130 (-)
LOC113545103 LOC108270188 coding downstream 515981 8153983 ~ 8171170 (-)
daam2 daam2 coding downstream 609092 7959349 ~ 8078059 (-)
rbks rbks coding downstream 849856 7799917 ~ 7837295 (-)
LOC117598359 NA coding upstream 93110 8837517 ~ 8842741 (-)
LOC117598356 NA coding upstream 120846 8865253 ~ 8867511 (-)
LOC117598341 NA coding upstream 313556 9057963 ~ 9059808 (-)
paplna papln,LOC107570257 coding upstream 325956 9070363 ~ 9095460 (-)
psen1 psen1,LOC108269999,LOC108423477 coding upstream 359202 9103609 ~ 9115082 (-)
G161724 NA non-coding downstream 107030 8579163 ~ 8580121 (-)
G161587 NA non-coding downstream 358755 8237423 ~ 8328396 (-)
G161600 NA non-coding downstream 407559 8275071 ~ 8279592 (-)
G161389 NA non-coding downstream 508323 8178609 ~ 8178828 (-)
G161363 NA non-coding downstream 605487 8046437 ~ 8081664 (-)
G162067 NA non-coding upstream 60 8744467 ~ 8913003 (-)
G162049 NA non-coding upstream 5837 8750244 ~ 8756566 (-)
G162068 NA non-coding upstream 161251 8905658 ~ 8914686 (-)
G162187 NA non-coding upstream 466485 9210892 ~ 9211149 (-)
G162268 NA non-coding upstream 597133 9341540 ~ 9341981 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other downstream 1418019 7203781 ~ 7269132 (-)
G160645 LOC108270426 other downstream 1878582 6807484 ~ 6808569 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 2334497 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 2506473 6100665 ~ 6180678 (-)
ncmap NA other downstream 2676163 5994040 ~ 6010988 (-)
LOC113545095 NA other upstream 316076 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 746810 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 1515042 10259449 ~ 10261465 (-)
LOC113538721 prima1,LOC108270468,LOC108423434 other upstream 1659667 10404074 ~ 10417586 (-)
fam98b fam98b other upstream 1727579 10471986 ~ 10479042 (-)

Expression


Co-expression Network