RNA id: TU191898


Basic Information

Item Value
RNA id TU191898
length 310
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G162041
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 8687151 ~ 8744407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttctttctagcccagagtGCAGATTTATGCAGACTATCAGGACAGAGGGCACTGGTCAGGAAGCTGAATAGTTTAGGCCTGTGCAATTCCATCTGCAAGTGGGTGCTGTCTGCAAAGAGCCAAACTCTGGTTCACTACTGGCTGTGGTGTACACGATGAACTCCATACTCTCTCCTTGGCGCTGTCTGTACCAGTACATCTGATAATAGCTGCCACCTTTATTATGACTGCAGTTCATTTCAGCATCTTCTCCTTTCAGATGCCAGAAAACACTGGGGTTTTGGGTGACTCCATTCTCTCCTGCTAAAA

Function

GO:

id name namespace
GO:0042398 cellular modified amino acid biosynthetic process biological_process
GO:0006749 glutathione metabolic process biological_process
GO:0006750 glutathione biosynthetic process biological_process
GO:0044272 sulfur compound biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0006575 cellular modified amino acid metabolic process biological_process
GO:0004032 alditol molecular_function
GO:0004033 aldo-keto reductase (NADP) activity molecular_function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191502 lncRNA downstream 107030 8579163 ~ 8580121 (-) True G161724
TU191355 lncRNA downstream 358755 8304593 ~ 8328396 (-) False G161587
TU191347 lncRNA downstream 364267 8237423 ~ 8322884 (-) True G161587
TU191373 lncRNA downstream 407559 8275071 ~ 8279592 (-) True G161600
TU191135 lncRNA downstream 508323 8178609 ~ 8178828 (-) True G161389
TU191935 lncRNA upstream 60 8744467 ~ 8913003 (-) True G162067
TU191906 lncRNA upstream 5837 8750244 ~ 8756566 (-) True G162049
TU191936 lncRNA upstream 161251 8905658 ~ 8914686 (-) True G162068
XR_004579026.1 lncRNA upstream 163841 8908248 ~ 8917218 (-) False LOC117598368
TU191925 lncRNA upstream 163953 8908360 ~ 8916532 (-) False LOC117598368
XM_026944261.2 mRNA downstream 160204 8330025 ~ 8526947 (-) True LOC113545107
XM_034307771.1 mRNA downstream 361021 8273235 ~ 8326130 (-) True LOC113545037
XM_026944256.2 mRNA downstream 515981 8153983 ~ 8171170 (-) False LOC113545103
XM_034308376.1 mRNA upstream 93110 8837517 ~ 8842741 (-) True LOC117598359
XM_034308377.1 mRNA upstream 95325 8839732 ~ 8842741 (-) False LOC117598359
XM_034308373.1 mRNA upstream 120846 8865253 ~ 8867511 (-) False LOC117598356
XM_034308372.1 mRNA upstream 120846 8865253 ~ 8867511 (-) True LOC117598356
XM_034308256.1 mRNA upstream 325956 9070363 ~ 9095460 (-) False paplna
TU190625 other downstream 1473767 7205468 ~ 7213384 (-) False zgc:103755
TU190339 other downstream 1878582 6807484 ~ 6808569 (-) True G160645
TU189667 other downstream 2676378 5994136 ~ 6010773 (-) False ncmap
XR_004579002.1 other downstream 2951410 5725070 ~ 5735741 (-) False eno4
TU189103 other downstream 3745836 4936094 ~ 4941315 (-) True G159588
LOC117598341 other upstream 313556 9057963 ~ 9059808 (-) True LOC117598341
LOC113545095 other upstream 316162 9060569 ~ 9065278 (-) True LOC113545095
XR_004578987.1 other upstream 746810 9491217 ~ 9516451 (-) False LOC113538771
trnas-aga_11 other upstream 883986 9628393 ~ 9628474 (-) True trnas-aga_11
trnal-aag other upstream 1463720 10208127 ~ 10208208 (-) True trnal-aag

Expression Profile