Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117598341 |
| length | 576 |
| RNA type | V_segment |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC117598341 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 9057963 ~ 9059808 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU191931 | lncRNA | downstream | 140352 | 8741113 ~ 8917611 (-) | False | LOC117598368 |
| TU191928 | lncRNA | downstream | 140612 | 8739435 ~ 8917351 (-) | False | LOC117598368 |
| TU191927 | lncRNA | downstream | 140612 | 8908360 ~ 8917351 (-) | False | LOC117598368 |
| TU191929 | lncRNA | downstream | 140612 | 8915301 ~ 8917351 (-) | True | LOC117598368 |
| XR_004579026.1 | lncRNA | downstream | 140745 | 8908248 ~ 8917218 (-) | False | LOC117598368 |
| TU192024 | lncRNA | upstream | 675 | 9060483 ~ 9060685 (-) | False | LOC113545095 |
| TU192076 | lncRNA | upstream | 151084 | 9210892 ~ 9211149 (-) | True | G162187 |
| TU192163 | lncRNA | upstream | 281732 | 9341540 ~ 9341981 (-) | True | G162268 |
| TU192174 | lncRNA | upstream | 336447 | 9396255 ~ 9396972 (-) | True | G162279 |
| TU192446 | lncRNA | upstream | 489534 | 9549342 ~ 9549580 (-) | True | G162497 |
| XM_034308373.1 | mRNA | downstream | 190452 | 8865253 ~ 8867511 (-) | False | LOC117598356 |
| XM_034308372.1 | mRNA | downstream | 190452 | 8865253 ~ 8867511 (-) | True | LOC117598356 |
| XM_034308376.1 | mRNA | downstream | 215222 | 8837517 ~ 8842741 (-) | True | LOC117598359 |
| XM_034308377.1 | mRNA | downstream | 215222 | 8839732 ~ 8842741 (-) | False | LOC117598359 |
| XM_026944261.2 | mRNA | downstream | 531016 | 8330025 ~ 8526947 (-) | True | LOC113545107 |
| XM_034308256.1 | mRNA | upstream | 10555 | 9070363 ~ 9095460 (-) | False | paplna |
| XM_034308255.1 | mRNA | upstream | 10555 | 9070363 ~ 9095460 (-) | True | paplna |
| XM_026934414.2 | mRNA | upstream | 43801 | 9103609 ~ 9115082 (-) | True | psen1 |
| XM_026934415.2 | mRNA | upstream | 43801 | 9103609 ~ 9115081 (-) | False | psen1 |
| XM_026934025.2 | mRNA | upstream | 64903 | 9124711 ~ 9150730 (-) | True | trappc12 |
| TU190625 | other | downstream | 1844579 | 7205468 ~ 7213384 (-) | False | zgc:103755 |
| TU190339 | other | downstream | 2249394 | 6807484 ~ 6808569 (-) | True | G160645 |
| TU189667 | other | downstream | 3047190 | 5994136 ~ 6010773 (-) | False | ncmap |
| XR_004579002.1 | other | downstream | 3322222 | 5725070 ~ 5735741 (-) | False | eno4 |
| TU189103 | other | downstream | 4116648 | 4936094 ~ 4941315 (-) | True | G159588 |
| LOC113545095 | other | upstream | 761 | 9060569 ~ 9065278 (-) | True | LOC113545095 |
| XR_004578987.1 | other | upstream | 431409 | 9491217 ~ 9516451 (-) | False | LOC113538771 |
| trnas-aga_11 | other | upstream | 568585 | 9628393 ~ 9628474 (-) | True | trnas-aga_11 |
| trnal-aag | other | upstream | 1148319 | 10208127 ~ 10208208 (-) | True | trnal-aag |
| trnal-aag_1 | other | upstream | 1149741 | 10209549 ~ 10209630 (-) | True | trnal-aag_1 |
