id3 (id3)


Basic Information

Item Value
gene id id3
gene name id3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 6393367 ~ 6394869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944322.2
CTTGGATTTTGTgttgtgaaaaagaaagtaaaaaaaaaaaaaaacatgaaggccATCAGCCCTGTTCGCTCGGTGAGAAGCTGCTACGAGGCTGTGTGTTGTATTTCGGAGCAGAGTTTGTCCATCAGCCGGAGCCGGAGTCCCAGCGAGGAGCCGGTTGGAGCTCTGAGCGACATGAACGACTGCTACTCCCGCCTGAAGGAGCTGGTCCCGAGCATCCCGCAGAATAAATCCGTCAGCCAGATCGAGATCCTGCAGCATGTCATCGACTATATTTTCGATCTCCAGATCGCGCTGGAAAGCCCTACAGGCGCTCCGGACATGCTGAAGGCACTGAAGAGCTCAGACATCAAGCACAGCCTGTCCAAAGAAAGTGATGGAGCTCTGTGCCATTAGAAGAGCGCGCGCCTCAACTTTTTTCCATTGGTGCAGGACAGAAACTTCTCCACTCATGGacaagagagagggagtgaaatggctgaacacacacacacacacacacacacacacacacacacacatacacaaggaGTGCGGCTATTCAGAGTGTGGGAAAAGAACCTGCACCCCACTCGAACCATGCAGTCTTTGGTCACTGGACACTTGAACACACCAAAGCTGAAGATTTCTGAAGTTTGGATGGAAAGCTCtcttaaagttttttcttttt

Function

symbol description
id3 Predicted to enable protein dimerization activity. Acts upstream of or within dopaminergic neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; germ ring; nervous system; polster; and presumptive ectoderm. Orthologous to human ID3 (inhibitor of DNA binding 3, HLH protein).

NR:

description
DNA-binding protein inhibitor ID-3-A-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K17694 ID3; DNA-binding protein inhibitor ID3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944322.2 True 670 mRNA 0.50 3 6393367 6394869

Neighbor

gene id symbol gene type direction distance location
e2f2 e2f2 coding downstream 10747 6363161 ~ 6382620 (-)
nipal3 nipal3,LOC107721898,LOC107668505,LOC107654843,LOC107711811 coding downstream 323307 6057131 ~ 6070060 (-)
rcan3 rcan3,LOC108269498,LOC107721505,LOC107668510 coding downstream 338858 6018832 ~ 6054509 (-)
rlf rlf coding downstream 530510 5847068 ~ 5862857 (-)
LOC113544977 LOC108270284 coding downstream 787581 5585661 ~ 5605786 (-)
si:ch1073-358c10.1 msra,si:ch1073-358c10.1,LOC107590893,LOC107697700 coding upstream 45552 6440421 ~ 6479814 (-)
ythdf2 ythdf2,LOC107721611,LOC107697702,LOC107654833 coding upstream 110751 6505620 ~ 6517668 (-)
LOC113545117 NA coding upstream 223603 6618472 ~ 6627329 (-)
LOC113545082 LOC108269854,LOC107600659,LOC107664420,LOC108423421,LOC105893120,LOC100334818 coding upstream 240963 6635832 ~ 6642578 (-)
smoc1 smoc1 coding upstream 255110 6649979 ~ 6707527 (-)
G160269 NA non-coding downstream 194224 6167200 ~ 6199143 (-)
G160268 NA non-coding downstream 249205 6143897 ~ 6144162 (-)
LOC117598232 NA non-coding downstream 301796 6087221 ~ 6091571 (-)
G160058 NA non-coding downstream 399378 5991920 ~ 5993989 (-)
G160012 NA non-coding downstream 441564 5949126 ~ 5951803 (-)
G160463 NA non-coding upstream 331672 6726541 ~ 6726752 (-)
G160480 NA non-coding upstream 358841 6753710 ~ 6753996 (-)
G161062 NA non-coding upstream 987538 7382407 ~ 7382623 (-)
G161118 NA non-coding upstream 1207092 7601961 ~ 7602174 (-)
G161239 NA non-coding upstream 1308870 7703739 ~ 7703967 (-)
asap3 LOC108270084,LOC108438745,LOC107721750 other downstream 40713 6301534 ~ 6352654 (-)
cnksr1 cnksr1 other downstream 212689 6100665 ~ 6180678 (-)
ncmap NA other downstream 382379 5994040 ~ 6010988 (-)
eno4 eno4 other downstream 657626 5725070 ~ 5735741 (-)
G159588 peli1,peli1b,LOC108269786,LOC105933346,LOC107583565,LOC107670869 other downstream 1452052 4936094 ~ 4941315 (-)
G160645 LOC108270426 other upstream 412615 6807484 ~ 6808569 (-)
zgc:103755 clip4,LOC107676111,LOC107685343 other upstream 808912 7203781 ~ 7269132 (-)
LOC113545095 NA other upstream 2665614 9060483 ~ 9065278 (-)
LOC113538771 hpcal1,LOC106607246,LOC105015955,LOC107565203 other upstream 3096348 9491217 ~ 9516451 (-)
acyp1 acyp1 other upstream 3864580 10259449 ~ 10261465 (-)

Expression


Co-expression Network