Gene
RNA
| Item | Value |
|---|---|
| gene id | G157704 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 2232587 ~ 2232833 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: probable basic-leucine zipper transcription factor H |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU186939 | True | 247 | lncRNA | 0.50 | 1 | 2232587 | 2232833 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113547740 | LOC108261668 | coding | downstream | 243160 | 1972315 ~ 1989427 (-) |
| LOC113547742 | LOC108261668 | coding | downstream | 267372 | 1953194 ~ 1965215 (-) |
| LOC117598256 | NA | coding | downstream | 431555 | 1758951 ~ 1801032 (-) |
| LOC117598315 | NA | coding | downstream | 488247 | 1736186 ~ 1744340 (-) |
| LOC113547729 | NA | coding | downstream | 498964 | 1658708 ~ 1733623 (-) |
| iars2 | iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 | coding | upstream | 165183 | 2398016 ~ 2412915 (-) |
| qrsl1 | qrsl1 | coding | upstream | 216559 | 2449392 ~ 2460527 (-) |
| crybg1a | NA | coding | upstream | 244956 | 2477789 ~ 2573533 (-) |
| clic4 | clic4,LOC107654867 | coding | upstream | 345317 | 2578150 ~ 2614364 (-) |
| srrm1 | srrm1,LOC107583602,LOC107721297 | coding | upstream | 389586 | 2622419 ~ 2642156 (-) |
| G157692 | LOC108270146 | non-coding | downstream | 24651 | 2207670 ~ 2207936 (-) |
| G157677 | NA | non-coding | downstream | 104950 | 2127333 ~ 2127637 (-) |
| G157673 | NA | non-coding | downstream | 117304 | 2115063 ~ 2115283 (-) |
| G157660 | NA | non-coding | downstream | 167108 | 2065231 ~ 2065479 (-) |
| G157657 | NA | non-coding | downstream | 174320 | 2056020 ~ 2058267 (-) |
| G157724 | NA | non-coding | upstream | 61462 | 2294295 ~ 2294532 (-) |
| G157734 | NA | non-coding | upstream | 80083 | 2312916 ~ 2332675 (-) |
| G158097 | NA | non-coding | upstream | 128886 | 2361719 ~ 2367039 (-) |
| G158111 | NA | non-coding | upstream | 342479 | 2575312 ~ 2603151 (-) |
| LOC117598373 | NA | non-coding | upstream | 448259 | 2681092 ~ 2683413 (-) |
| LOC113547724 | LOC108269731 | other | downstream | 321283 | 1858555 ~ 1911304 (-) |
| LOC113547736 | hmx1,LOC108269487 | other | downstream | 626012 | 1603860 ~ 1606575 (-) |
| G157519 | LOC108269687 | other | downstream | 825025 | 1403526 ~ 1407562 (-) |
| G157110 | slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 | other | downstream | 1687828 | 514801 ~ 544759 (-) |
| G156942 | LOC107676803 | other | downstream | 1879417 | 352834 ~ 353170 (-) |
| G157723 | NA | other | upstream | 58189 | 2291022 ~ 2291459 (-) |
| G158503 | NA | other | upstream | 1135271 | 3368104 ~ 3369756 (-) |
| G158507 | NA | other | upstream | 1157907 | 3390740 ~ 3394808 (-) |
| G158509 | NA | other | upstream | 1162658 | 3395491 ~ 3398763 (-) |
| LOC117598319 | NA | other | upstream | 1176540 | 3409373 ~ 3411811 (-) |
