clic4 (clic4,LOC107654867)


Basic Information

Item Value
gene id clic4
gene name clic4,LOC107654867
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 2578150 ~ 2614364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308313.1
gtccacatccacatccacaatCATCCCGCCCTTAAGTCtcgccccacacacacacacacacacacacatacacagtgagaGTGGCTGTATCTGCGGCCAGCGATGCCGAACTGATCCCTCATCCCGAATCTGTGGGGaaagaatatataaaaatatatataaacagtgtgGAATAACGGCGTATCGACGGTGCTGTGTTCTCTCAGTGAGACAGGAGTGTTAGCTTAAAAGCTAATCTTACTCAGCGCTGGGGAAAGTTTGCGCGAGGACCACCTtctgcgcgcgcgcgtgtgtgtgtatgtgtgagtgagtgtgtgtgtgtgttttttctctctaaacCAAATTTCATACGGAAAGTTCGGGAATGTCGCTGTCGGTACCGCAGAACGGACAGGGCGATAACGAACCCGTTATCGAGCTTTTTGTCAAGgcgGGCAGTGATGGAGAGAGCATAGGGAACTGTCCCTTCTCCCAGCGTCTCTTCATGATCCTGTGGCTGAAGGGAGTGGTGTTTAACGTCACCACCGTCGACCTGAAACGgaaaCCAGCGGATCTTCAGAACCTGGCTCCGGGAACGCACCCTCCATTCGTCACGTTCAACGGCGAGGTCAAGACTGACGTTAACAAGATCGAGGAGTTCCTGGAAGATGTGCTCTGCCCACccaaGTACGCTAAGCTCAGCGCCAGACACCCCGAGTCCAACACCGCGGGGATGGACATCTTCGCCAAGTTCTCCGCCTACATCAAGAACTCCAAACCGGACGCCAACGAGGgtCTGGAGCGAGGTCTTCTGAAGACGCTGCAGAAGTTGGACGAGTATCTGCGCTCTCCCCTGCCAGACGAGATCGACCACAACAGCATGGAGGACGTCAAAACGTCCAGCCGCAAATTCCTGGACGGAGACGAGATGACGCTGGCCGACTGCAACCTGCTGCCCAAACTGCACATCGTCAAGGTGGTGGCGAAAAAGTACCGAGGCTTTGAGATCCCTAAAGACATGACGGCCGTGTGGAAGTACCTGAGCAGCGCGTACTCCCGCGACGAGTTCACCAACACCTGCCCCAGCGACAAGGAGATCGAGATCGCTTACGCCGACGTGGCCAAGAGGCTCGTCAAATAAACGCCTTcaccagaagaaaaaaaaaaaaatcccttttttcctcttttt

Function

symbol description
clic4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport; glutathione metabolic process; and regulation of ion transmembrane transport. Predicted to be located in cytoplasm. Predicted to be part of chloride channel complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; immature eye; mesoderm; and pericardial region. Orthologous to human CLIC4 (chloride intracellular channel 4).

NR:

description
PREDICTED: chloride intracellular channel protein 4

GO: NA

KEGG:

id description
K05024 CLIC4; chloride intracellular channel protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308313.1 True 1168 mRNA 0.53 6 2578150 2614364

Neighbor

gene id symbol gene type direction distance location
crybg1a NA coding downstream 4617 2477789 ~ 2573533 (-)
qrsl1 qrsl1 coding downstream 117623 2449392 ~ 2460527 (-)
iars2 iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 coding downstream 165235 2398016 ~ 2412915 (-)
LOC113547740 LOC108261668 coding downstream 588723 1972315 ~ 1989427 (-)
LOC113547742 LOC108261668 coding downstream 612935 1953194 ~ 1965215 (-)
srrm1 srrm1,LOC107583602,LOC107721297 coding upstream 8055 2622419 ~ 2642156 (-)
tdh2 tdh2,LOC108269662,LOC108433314,LOC107583601,LOC107582959,LOC107659247,LOC107721289 coding upstream 29685 2644049 ~ 2653264 (-)
zgc:154055 LOC108270438,LOC108433315 coding upstream 47797 2662161 ~ 2677478 (-)
tmem54a NA coding upstream 147903 2762267 ~ 2776686 (-)
LOC113545141 kbtbd11,LOC102794541 coding upstream 224705 2839069 ~ 2846133 (-)
G158097 NA non-coding downstream 211111 2361719 ~ 2367039 (-)
G157734 NA non-coding downstream 245475 2312916 ~ 2332675 (-)
G157724 NA non-coding downstream 283618 2294295 ~ 2294532 (-)
G157704 NA non-coding downstream 345317 2232587 ~ 2232833 (-)
G157692 LOC108270146 non-coding downstream 370214 2207670 ~ 2207936 (-)
LOC117598373 NA non-coding upstream 66728 2681092 ~ 2683413 (-)
LOC117598338 NA non-coding upstream 83104 2697468 ~ 2698647 (-)
G158167 fam167b,LOC108270378,LOC107659234,LOC108433301 non-coding upstream 97195 2711559 ~ 2732790 (-)
G158205 pabpc4 non-coding upstream 190883 2805247 ~ 2809575 (-)
G158218 NA non-coding upstream 222251 2836615 ~ 2836850 (-)
G157723 NA other downstream 286691 2291022 ~ 2291459 (-)
LOC113547724 LOC108269731 other downstream 666846 1858555 ~ 1911304 (-)
LOC113547736 hmx1,LOC108269487 other downstream 971575 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 1170588 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 2033391 514801 ~ 544759 (-)
G158503 NA other upstream 753740 3368104 ~ 3369756 (-)
G158507 NA other upstream 776376 3390740 ~ 3394808 (-)
G158509 NA other upstream 781127 3395491 ~ 3398763 (-)
LOC117598319 NA other upstream 795009 3409373 ~ 3411811 (-)
LOC113545102 banf1,LOC108270073,LOC108431661,LOC106576720,LOC104936919,LOC105900308 other upstream 2126917 4741281 ~ 4750234 (-)

Expression


Co-expression Network