LOC113546939


Basic Information

Item Value
gene id LOC113546939
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21699990 ~ 21700504 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC113546939
CTGTGTTGGTTATTCATTTACTCTCTGATAACTACTCTGTGGAGCAGAAATTGCAGAAGGATGATTTTAggatattgtattgtattggtgTTAATTTCATATTCTTATGGACAGTCCCTGACCTCCTCTGCTTCTGTGGTGAAGAGACCTGGAGAGTCAGTCACTCTGTCCTGTACTGTCTCCGGATTCTCACTGAGTAGCTACTACATGAGCTGGATCCGTCAGAAACCAGGAAAAGGACTGGAGTGGATCGGGCGCATTGACACTGGCACTAGCACAacattctctcagtctctgcagGGCCAGTTCTCCATCACTAAAGACAccaataaaaacatgctgtaccTAGAAGTGAAGAGTCTGAAAGCTGAAGACAcggctgtttattactgtgcacgacac

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
LOC113546939 True 402 V_segment 0.45 2 21699990 21700504

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 6356 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 8414 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 15345 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 23183 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 26660 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 852220 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 929377 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 961056 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 977660 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 1006050 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 54096 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 65126 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 68123 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 78069 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 83158 21616602 ~ 21616832 (-)
G215194 NA non-coding upstream 22967 21723471 ~ 22134451 (-)
G215217 NA non-coding upstream 321582 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 324979 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 379658 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 420952 22121456 ~ 22133365 (-)
LOC117598880 NA other downstream 196 21699292 ~ 21699794 (-)
LOC117598964 NA other downstream 1816 21697743 ~ 21698174 (-)
LOC117598877 NA other downstream 4631 21694872 ~ 21695359 (-)
LOC113528016 thegl other downstream 340800 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 427483 21236802 ~ 21272507 (-)
LOC117598882 NA other upstream 2077 21702581 ~ 21704069 (-)
G215192 NA other upstream 5986 21706490 ~ 21707052 (-)
LOC117598971 NA other upstream 8149 21708653 ~ 21709423 (-)
LOC117598779 NA other upstream 41647 21742151 ~ 21742595 (-)
LOC117598780 NA other upstream 43207 21743711 ~ 21744191 (-)

Expression


Co-expression Network