LOC117598862


Basic Information

Item Value
gene id LOC117598862
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22319544 ~ 22320275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598862
CGTAATAAAAAGCTCTCTCAGCTGTGGAGATGTGAGAGCAGTAGTCGTACCGGTGCCAATCCAAACGCCATgagctccatctctctcctgcTGTTTCTGACAGCTGCTTCCTGTGTGAATTCGGTTGAATTTACTCAGTCAGATAATATAGTTCTACGTGCTGGGGAGGCGTTTACCATCTCCTGTAAATTCTCTGGGTTTTCAATATCCAGCTACTGTCCTCACTGGATTCGACAAATGCCATCCAAGACTTTGGAACATACTGGATATGTGTGTAGCAGCAGCTCTAATGTAAAGGACTCACTCAAGAGCAAAATCAGTTTCTCTGCAGACGTCTCCAGCAGCACAGTGTTTTTAAAGGGGCAACATTTTCAGACGGaggacacagctgtgtattactgcacaCGAGAGTCACAGTTATTCAGATTACTGGTGCAGCTGTACAAAAACCAGGGTTATGCTGTGTTGAGTTAGTTTTAGAGTGTGGTTAGTGATATCCCTCCATGAACATTAGAAAAAGACCTGATTAAACATTGGGTTTCATCTTTTAGACCTTTGTGTGGTTGCTgggtttaaaagaaaataaataaataaaatctctgaAATATTGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598862 True 614 V_segment 0.42 2 22319544 22320275

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 625910 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 627968 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 634899 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 642737 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 646214 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 232449 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 309606 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 341285 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 357889 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 386279 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 122132 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 179404 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 183537 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 186179 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 236701 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 70081 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 125847 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 154746 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 157701 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 413454 22733729 ~ 22734095 (-)
LOC113546926 NA other downstream 5673 22312787 ~ 22313871 (-)
G215182 LOC108275153 other downstream 33841 21696660 ~ 22285703 (-)
LOC117598921 NA other downstream 42075 22277026 ~ 22277469 (-)
LOC117598813 NA other downstream 43649 22275061 ~ 22275895 (-)
G215235 NA other downstream 47334 22250931 ~ 22272210 (-)
LOC117598975 NA other upstream 899 22321174 ~ 22321733 (-)
LOC117598814 NA other upstream 6451 22326726 ~ 22364265 (-)
LOC117598969 NA other upstream 79410 22399685 ~ 22419910 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other upstream 336267 22656542 ~ 22704483 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 449362 22769637 ~ 22779068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location