RNA id: LOC117598862


Basic Information

Item Value
RNA id LOC117598862
length 614
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117598862
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22319544 ~ 22320275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAATAAAAAGCTCTCTCAGCTGTGGAGATGTGAGAGCAGTAGTCGTACCGGTGCCAATCCAAACGCCATgagctccatctctctcctgcTGTTTCTGACAGCTGCTTCCTGTGTGAATTCGGTTGAATTTACTCAGTCAGATAATATAGTTCTACGTGCTGGGGAGGCGTTTACCATCTCCTGTAAATTCTCTGGGTTTTCAATATCCAGCTACTGTCCTCACTGGATTCGACAAATGCCATCCAAGACTTTGGAACATACTGGATATGTGTGTAGCAGCAGCTCTAATGTAAAGGACTCACTCAAGAGCAAAATCAGTTTCTCTGCAGACGTCTCCAGCAGCACAGTGTTTTTAAAGGGGCAACATTTTCAGACGGaggacacagctgtgtattactgcacaCGAGAGTCACAGTTATTCAGATTACTGGTGCAGCTGTACAAAAACCAGGGTTATGCTGTGTTGAGTTAGTTTTAGAGTGTGGTTAGTGATATCCCTCCATGAACATTAGAAAAAGACCTGATTAAACATTGGGTTTCATCTTTTAGACCTTTGTGTGGTTGCTgggtttaaaagaaaataaataaataaaatctctgaAATATTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254808 lncRNA downstream 36214 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA downstream 36214 22260997 ~ 22283330 (-) False G215182
TU254864 lncRNA downstream 78582 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA downstream 82033 22236967 ~ 22237511 (-) False G215182
TU254995 lncRNA downstream 122132 22164570 ~ 22197412 (-) True G215228
TU255019 lncRNA upstream 18767 22339042 ~ 22344517 (-) False LOC117598814
TU255027 lncRNA upstream 70081 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 125847 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA upstream 154746 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA upstream 157701 22477976 ~ 22480922 (-) True LOC117598972
XM_026936343.2 mRNA downstream 705669 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 705669 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 939328 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 952432 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 6451 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 79410 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 232449 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 233354 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 233355 22553630 ~ 22582102 (-) False topaz1
TU255010 other downstream 5673 22312921 ~ 22313871 (-) True LOC113546926
LOC113546926 other downstream 6107 22312787 ~ 22313437 (-) False LOC113546926
TU254819 other downstream 33841 22262123 ~ 22285703 (-) True G215182
TU254852 other downstream 36214 22254426 ~ 22283330 (-) False G215182
TU254855 other downstream 42009 22277067 ~ 22277535 (-) False G215182
XR_004579410.1 other upstream 899 22321174 ~ 22321733 (-) True LOC117598975
TU255018 other upstream 18767 22339042 ~ 22364265 (-) False LOC117598814
XR_004579404.1 other upstream 88959 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other upstream 93392 22413667 ~ 22419910 (-) True LOC117598969
TU255282 other upstream 378138 22698413 ~ 22704479 (-) False smim13

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) LOC111190149 False 399 V_segment 0.47 2 NW_019172441.1 149709 ~ 150307 (+)