RNA id: TU255282


Basic Information

Item Value
RNA id TU255282
length 1473
RNA type TUCP
GC content 0.45
exon number 3
gene id smim13
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22656542 ~ 22704483 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGGTCACCTACTTCCTGGATCATTTTGTTGTTGCCTGTAACTCGTACAGTTTTGCTAGGAAATATTGTTTCATAAACGTGTCGCAGTTATGTAGAAAGCTTACTAACAGAAGACCAGCAGGCCCTCCATGAGCCGTGTGTGTCCCCGTGAGGAACGAGTGGACTgagagacagagagagacagagagagaaagaaagagagagagagggagagaatgtgGCAGAGTCTGGGCTTGACTGTGCTGGTCATCGTGGCCACTCTCATCTGTGTGCTGCTCTTCATGCTCTTCGGTTGGTACGTGGTGTGGCAGCTCTTCCTGTCCAAGTTTAAATTCCTGCGAGAGCTGGTCGGGGACACGGGCTCGCCACAGGCCGAAACGGAACCCTCGGAATCGGAGAGCGAACGCAGCTCCCCTCCGACGCCCCGCCATCGAGCCAAACCCGCACGCCAAAGAGTCGCTTTTCCAAGCAGCACTACGTAAATTTCAAGAAAACACTTTCGAGCTCCGAAATGAAATTGATGAACGAGCCACTCAGAAAGCACTTGCCCCTTTTAGACCTTgccaaaaataacaaagaaaggGGTGCCAAGCAAAATTTAAATGCTTAATATCGATGTGTATAGTTGTAGTCTATACAGCATTTTCCTTGACTAAAATTAcagcttctcttctctctccctgtcttcacctcttccttttctttctttagttttATTCCATTGTCAGAAAGGCACTGTGTAAATAACTTAGTGTTCAGTTAGAAGAGAGTTCTTCTTCGCAGATCACATCCAGGACCTTACAGCTATCAAACCGTCAAACCGTCCTCGTCTATTTATCTGTTTCGAGACTGTGTACAGTCGAAAGACAAAGTGGACAGTTGAAAGACGAACTACATTTTACGATTTTCCGTTTCCGAAGCGGCTCGGGCAGGCCTGCTACTCCTCGTTCGACTGACTTGCCATCATGCTGCTAAACCATTTCATACAGGTAACCGCACACGGGCTGCTAGGTGAGAGGGAACCGTAAAAGGAGACGTAAACAATGCTCTGAAGCTAAACATCTGAAGCAAACTGACAAAACAGTCtgactttatttacattcaaCTCTTTTAGACATCTGATGTGCAATGCAAGGAGGAATGTACCAATCAGCTAGCAGAAAATAGGCCCCACACCTCCGCAATGAAACGTTTCCAGGCTAACCTTGGGTTCCACATGCGATACAGGGGTTGGAGCTTTGTGACGCCACTCATATAGGATtcatttgttgttttctttaacCATGctaaagattaatattaataaatcagaTCTGTTACTAGTCGACTCCACTCCTTCTGAGCTCGCCCAGAATGAGCCAACTCCACTGAAACAGCGTAAAGCAGCATGGaagctgttatattttatgttttaggaTCATTTCTGTTATGGCAACAGCTGTATTTTTCCCTTCACAATAAAAGTATTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255043 lncRNA downstream 154433 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA downstream 190550 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA downstream 217491 22477976 ~ 22480922 (-) True LOC117598972
TU255027 lncRNA downstream 300662 22390356 ~ 22397751 (-) True G215249
TU255019 lncRNA downstream 353896 22339042 ~ 22344517 (-) False LOC117598814
TU255306 lncRNA upstream 29250 22733729 ~ 22734095 (-) True G215507
TU255308 lncRNA upstream 32797 22737276 ~ 22737479 (-) True G215509
TU255292 lncRNA upstream 50081 22754560 ~ 22755107 (-) True G215494
TU255279 lncRNA upstream 65158 22769637 ~ 22778819 (-) False cltb
TU255287 lncRNA upstream 76844 22781323 ~ 22815252 (-) False G215489
XM_034309655.1 mRNA downstream 1590 22678164 ~ 22696823 (-) False LOC113546904
XM_026947018.2 mRNA downstream 9031 22678164 ~ 22689382 (-) False LOC113546904
XM_034309654.1 mRNA downstream 9031 22678164 ~ 22689382 (-) True LOC113546904
XM_026947019.2 mRNA downstream 15310 22678164 ~ 22683103 (-) False LOC113546904
XM_026947051.2 mRNA downstream 21665 22661560 ~ 22676748 (-) True LOC113546927
XM_034309816.1 mRNA upstream 2075 22706554 ~ 22729853 (-) True cdhr2
XM_034310258.1 mRNA upstream 51502 22755981 ~ 22763871 (-) True faf2
XM_026947036.2 mRNA upstream 65160 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA upstream 65160 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA upstream 65160 22769639 ~ 22779057 (-) False cltb
XR_004579404.1 other downstream 278503 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 278503 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 334148 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 376680 22321174 ~ 22321733 (-) True LOC117598975
LOC117598862 other downstream 378138 22319544 ~ 22320275 (-) True LOC117598862
TU255280 other upstream 65158 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 432447 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 620006 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1836356 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 2160168 24864647 ~ 24864718 (-) True trnad-guc_6

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028615 False 829 mRNA 0.49 2 NC_007130.7 3718166 ~ 3724605 (-)
grasscarp (Ctenopharyngodon idella) TU20262 True 377 lncRNA 0.38 1 CI01000001 7555678 ~ 7556054 (-)
eurasian perch (Perca fluviatilis) TU198769 True 3155 TUCP 0.45 2 NC_053125.1 29269414 ~ 29480487 (+)
tiger barb (Puntius tetrazona) TU198769 False 1947 TUCP 0.42 3 NC_056717.1 18927521 ~ 18933139 (-)
mexican tetra (Astyanax mexicanus) TU20262 False 653 lncRNA 0.49 4 NC_035898.1 32042341 ~ 32061852 (-)