RNA id: TU255292


Basic Information

Item Value
RNA id TU255292
length 548
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G215494
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22754560 ~ 22755107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttttttaattttttgctgttttttttttcttccaaatacAAACATGGCAAAAATGAGGTAACTGTAAATGTGCAAGTaccaaagcaaaaaacaaacaacaacaaaaacttcctaacacagaacaggtgtggCCCTGTTGTTGGCCCCGGGGTGGTGTAGATGTGGGTGTGTGGTGGGGTGTTGTGGGGCTCCGGAGTGGACGCGGCGCCCCCTACAGCCCAGGGCGAGTATTAGAACAGTAAACAATCAACGAGCCCacagcaagaaaagaaaaaaaaaaattattggtaAACAATCAGTGGCATCTACGGAGCAATCAACAAATCACAAGTCCTAAAGAATCGGAGCTGCTTATTGGAACACAACTGCACCACACAAGCTGTgagattatttattaatcagaTCACAGAAAGACTACAAGATTctatgtatttgtatgtgtattttttttttttcagtacaggtAACACTGAGGTTCAAGGAATCAGATTATTGTGAAAATTTGCTTATAAATCTAAATAAGagtacagtataaacagctgTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255308 lncRNA downstream 17081 22737276 ~ 22737479 (-) True G215509
TU255306 lncRNA downstream 20465 22733729 ~ 22734095 (-) True G215507
TU255283 lncRNA downstream 50081 22656542 ~ 22704479 (-) False smim13
TU255043 lncRNA downstream 210580 22446122 ~ 22543980 (-) True G215262
TU255279 lncRNA upstream 14530 22769637 ~ 22778819 (-) False cltb
TU255287 lncRNA upstream 26216 22781323 ~ 22815252 (-) False G215489
TU255291 lncRNA upstream 33109 22788216 ~ 22797514 (-) True G215493
TU255286 lncRNA upstream 53292 22808399 ~ 22815252 (-) True G215489
TU255289 lncRNA upstream 67613 22822720 ~ 22826241 (-) True G215491
XM_034309816.1 mRNA downstream 24707 22706554 ~ 22729853 (-) True cdhr2
XM_026947021.2 mRNA downstream 50077 22698404 ~ 22704483 (-) True smim13
XM_026947018.2 mRNA downstream 65178 22678164 ~ 22689382 (-) False LOC113546904
XM_034310258.1 mRNA upstream 874 22755981 ~ 22763871 (-) True faf2
XM_026947036.2 mRNA upstream 14532 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA upstream 14532 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA upstream 14532 22769639 ~ 22779057 (-) False cltb
XM_026947083.2 mRNA upstream 71837 22826944 ~ 23035173 (-) True unc5a
TU255282 other downstream 50081 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 334650 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 334650 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 390295 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 432827 22321174 ~ 22321733 (-) True LOC117598975
TU255280 other upstream 14530 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 381819 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 569378 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1785728 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 2109540 24864647 ~ 24864718 (-) True trnad-guc_6

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016531 False 10617 lncRNA 0.33 4 NC_007125.7 50972410 ~ 50986606 (-)
eurasian perch (Perca fluviatilis) TU141072 True 3878 lncRNA 0.40 2 NC_053121.1 15086584 ~ 15090581 (+)
bowfin (Amia calva) TU133680 True 4400 lncRNA 0.37 1 CM030133.1 24986838 ~ 24991237 (+)