unc5a (unc5a,LOC107677380)


Basic Information

Item Value
gene id unc5a
gene name unc5a,LOC107677380
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22826944 ~ 23035173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947083.2
AATAcaagaaagagggagaagaaggagaagaaggaggagaagaaggcgACGATGCCGTTACACCCGCGTCCCTTTGTGCGCTGGAGAGCCGCGCAGATTCTCGCCTCGGTTTGGCTTCTGTCCGTCGGATTCACCTGCACCGGAGCGGAGCACGCAGCGACGGTGACGCACCCGCTCCCAGCTGCCTTCTCGGACCTGCTGCCCCACTTCCTGGTGGAGCCGGATGACGTCTACATCGTGAAGAATAAGCCGGTGACGTTGACCTGCCGCTCGACGCCCGCCACTCAGATCTACTTCAAGTGTAACGGAGAGTGGGTGCACCAGGACGACCATTTGATCGAGCGCACCGTCGATCCAGCTACAGGTTTCCCAGTGATGCAGGTGAAGATCGACATCTCACGCCAGCAGGTGGAGAAGATCTTCGGGCTGGAGGATTACTGGTGCCAGTGTGTGGCCTGGAGCACTACAGGAACCCAGAAGAGCCAAAAGGCTTACGTGCGCATCGCCTATCTGAGGAAAAACTTCGAGGAGGAGCCATTGGGCAAAGAGGTGGCACTCGACCAGGAAGTGCTTCTCCGCTGCCATCCTCCAGAGGGCGTCCCTACTGCTGAGGTGGAGTGGCAGAGGAATGAAGAGTTGATCGACCCCAAGGCTGACCCCAATTTCTTCATCACAGTGGACCATAATCTCATCATCAAACAAGCCCGGTTGGCCGACACCGGCAACTACACCTGCGTGGCCAAGAACATTGTGGCGCGACGCAAAAGCTCCTCAGCCGCCGTGATTGTCTACGtggacGGAGGCTGGAGCGAGTGGAGTAAATGGTCAGCGTGTGGGGCTGACTGCACCATGTGGAGGAGTAGGGAGTGCACCCAGCCTGCACCGGGTACCGGCGGCAAAGCGTGCCAGGGTCTCGACCTCCAGTCACTAAACTGTACGAGCGAACAGTGCCCACAGACCGTGTCCGGTGCGGAGGACGTGGCTCTCTACGTGGGCATTGTTGCCGTGGCGCTGTGTCTCACtctgctgctggtggtgctgGTCCTCGTGTATCGGAGGAAGAAGGAAGGGCTGGATGCGGACGTAGCCGACTCATCCATCCTCACGACCGGCTTCCAGCCCGTGGGCATCAAACCCGCCATGCCAGAAAACTCTCACCTGCTCACAATCCAGCCGGACCTGACCACGCCCGGTTACCAGGGCTCGCTGCGTACACGTCATGACCCGACTCCTAAATTCTCTCTGAGCGACGGGCCGCTTTTGGAGCCTCTGGCTAACGGATCGCACACCATGGCCAACGGCAAAGTGACCGGCGACAGCGGACACCTCACCAGCCGCCTCACCGCACAGAGCTACTTCAAGACTCTGCCCGCGGGAGCCGTCCACACCTCCTACGGCACCTTCAACTTCCTGGGAGGACGTCTTACCATCCCCAACACGGGGATCAGTCTGCTCATTCCTCCCGAGGCCATCCCCCGAGGCAAGATCTATGAGATTTACCTCACCGTACAGAGGAAGGACGATGTGAGACTGCCCCTGGCTGGGTGCCAGACGCTGCTGAGTCCGGTGGTGAGCTGCGGCCCACCGGGCGTCGTGCTGACTCGGCCCGTCATCATCAGCATGGAGCACTGCTCTGATTCCTGCACCGATCACTGGGCCATCAGGCTGAAGAAACAAACCTACGAGGGAACCTGGGAGGACGTGCTGCTGCTCGGCGAGGAGTTGGTGTCTGAGCCGTTTTACTGCCAGCTGGAGGCCGAGACGTGCCGCGTGTTCACCGAGCAGCTCGGACGCTTTGCTTTGGTCGGAGAGTCCCTCAGCATGGCCGCAGCCAAACGCCTCAAACTACTGCTGTTTGCCCCGGCCTACTGCTCCACGCTCGAATACACCATCCGTGTCTACTGCACTGATGACACACACGACCTCATCCAGGAGGTGATGCAGATGGAGGCGCAGCTTGGAGGTCGCCTCATTGACGAGCCACACGTTCTCCTGTTTAAAGACAGCTACCATAACCTGCGTCTCTCCGTCCACGACCTGCCACAGGCCCAGTGGAGGAGCAAGCTGCTCACCGCCTACCAGgagatcccattctaccacatctgGAGCGGCACACAGCGGAGTTTGCACTGCGCCTTCACGCTGGAGCGGATGAGTGTGAGCACGTGCGAGCTCTCCTGcacgctgtgtgtgtggcaggtggAAGGCGAAGGCCAGAGCTTCAGCCTCGACTTCAACATCTCCAAGGACACCAGGCCACTCGACGCTGATCTCCTGCTGGTGGATAATAGCAGCCCGGCTCTGGCCGGCCCTAGCGCCTTTCAGATCCCCTACCTCATCCGGCAGAAGATCTGCAGCAGTCTGGACGCGCCGTGCCCCAACGGAGCCGACTGGAGACTCCTCGCCCAGAGACTCAAACTCGACAGACACATGAGCTTCTTCGCGTCCAAAGCGAGTCCCACGTCTACGATCCTGGACCTTTGGGAAGCTCAGCATTTCCACAGCGGCAACCTGAACCAGCTCGCCGCCATCATGGCCGAGATCGGCAAACAGGAAGCCATGATATTCCTGGTGTCCGACGGGGAGTGctaacacatccacacacacacacacacacacacacataattacacacacatacacaaacagagcCAGGAATGAAGGCCTCTAAATGCTGGGGATCGAAAAGGTCTAATAGAGGAAGGACTAATCTAACAGGGTTTAGCCACAAGTTAGGTGTGCTGTGactataaacacactaaacacacacatgcaaagtaCATTTACGTCCAGCAACGATGTATAGAACACTCACAGATGTTGTTCCGGCCCTGTCTTGAATCACACTTTTTTAATTCACCGTTGCGTTCGCCACACTTctatctgattttttaaaaactggaaTCGAAAATAAGTACGAAAATCAGGATCGAAATTTGTAAGAAGGCAACTCAAAAGCTGGGACAAAGCTAGGacagggtggacaaatcagtggACAAATCAGTGGACAAATCAATCAAATAGATTTATCAaccaggaaaagaaaataaaccgtactccttattgtttttatttgctatGCAGCTATATTCAAACTTAAACGCACCTCGATCTGGTAACTATAGTCCGTGCTACTTGTTCCGAATCTCAGTATGAACTATACGTCACTTTGCAGGTAAGCATACTGAGAGAAAGTGAACATGCTAGCCAGACTCGAATAATTGATTCTGCGTGCAGTCTGAGGGCGGAACACCACGGCCCGTATCCAAAACGTTCACCAATagcttgctgactttttgtcaagGCCACAAACGTGATGTTCTACGTTAAAAAATGCAGAATTTCGTTCATTTCCCTGTATTAATGCACGTATCTAGCAAACTAGCACGTTGAACGTGATCATATTacgttagctaccactttttaacCCTAGTcagtttccaggcaaccaaaacatcgGACTGGCCAGCACATTGCACTAGTTACTTTCGCTTGCTAGCTAACGGATTTATGATTCGTCCACCCCTGTAGGATTAATTCCCTAAAGAAATCAGATGAAATTGCGGTTACAAATTTTTCGTGTTGCCGTTGagacactcattcacattttAGCAACGTGCGTTTTGTAACTGTGTGGCATTTAGCAATATGCAAACGCAAAAATGTTTTACGATACCACATTTGGAAGGTGTAACAAGTTTCTTTATTGAAGGTATAAATGAGATTTCCCATTTAAACCTGATGAAATTTATGAAGTTAACATGATAGAGAAGTAGAGAGCGTTGTGAAAAGGAGGTATGAAGGCAGCCGTGCTGCTTTAATACGACCACCAGCGTGTCAGTAATGTGACTGTCACTCAAATATGAGAactaaatagcaaaaaaaaaatgatttcagttTCATAACCAGCCGAAACGGATCAAACAAAGagaagtgtctgtgtgtgcaagCCGTCCGCTTTTCTTTACCCTTTGACCCTCTTCAGGCACCGTAACGCGGCTGCACTGCTTTTCCAAAGCCATAAACACAAATTCCCAAATGCATCGATAATAAAGAACACGGTCCTGATATGTGTGAGGAATAAAGTGAACATACGCAGGATCTTTACAAGACGTAGCTGAGAGGAAAGAGAACATTCAGTATAATGTTGATAAATATTTTCAGggaatttgttttcattttgttttacctAGAAATCTGAAGAAACAAAACATcactcgtttttttttaaaaccacgGCAtctaatttgatcatttttataaagaacGCTCTAAAAGAGTGAGGAATTTAGTATAAAATGCAATActatccttttttaaatttattttgtaatctatCCAATCAAATGTTGATCATATTTGTTTGCAGAACAGAGCTATTTTGGCTTTAGGGCATTCTGTAATACTTTAAATTCCCAAATCAATCTGAAATTCTCCATGAGCCAAAAAAATAGAACTGAGAAGCCTGATTGAGAATCGTAAAGCTGTGTAGCATcgggaaaaaaatgtctttaataaatatttgacacATGATCAAATTACAGTAATATACCAGGGGATATCAAGCAAGAAGTTCTCTTCtcaggctgctttcacactttagAAAACTCGCTGTTTTGGGCGACTTTTGTGTTCCCAGTCCTAGAGAGTTATTATAAttcagtaatgcagatgaaattCAAGACAATTTGAGCTGCTACAGTTAACATGGGATACGTGTCACATGACAGCCAGGTGAATATCCCAAAAATACACACGCTGTTCTGTTTAGTTACACCACATCATCAAAATATTAGCACTGACATATATTCACGACAAGGCTAGCTTTCCGCAGCACTTTgccctccatgtttgttttcgtgaaaaaaaaaatgtaatgttcttTTTCTAGTTTAGAAACATCCCACTTTCTAAGGATCGCACATAAAAACGTACGCTGgcgtgtgaaagtgtgaaagcagcctcaACAACGCAATGACGCAACTTATCCCAAGAACACGTACACGTTCGTCGGCTATTATGAATCAGAACGGTTTTATTTGCAACATCTAGGTTTCAAACGAGCAGTTTGTGgatgaaaaacaaagaattcCTCATACATAACACATCAGCCAAAACAAGTTCGATGTTCTTTCGCTTTTGCACCATAACCACGCGGCTGCCACGTGACCACCCGTTAGCATGCTAACATCGGACACATCTGCAATATTATTTGTTCATAAACAACTTAAAAAACTAACGCACCAAGTGTTAGATGTTGTAGATGTCATCacacctttttttatttgcatgattATTACAGCATGAGTGTTCAAAAGGTTTGTTACTTTTTAGCTACATGGGACTTTTCGCAAAATTTTGACTGATCAGCTACATTTGGAATGGGAATATGATTTCTcccaaactgctcctttaaccTGTAATTAATGAACTGTTCAAGAGTGCTTCACGGTCAGAATTCAGCGTTACGTTCAGCTGTATGCATAATAAACACGGTGTCCAGCTTTTAGTGGAACCTCATGAGTttgagtttcttttttatttaaaaaaaacaaaaaacaaaaaacgttcATCTATACAATTCACATTGTATATACGAATCTTTTCTATTCCAGTTCTGATGCTGGCGCTACACGTACACATCTCTGGAAGTCGGTAACCAAAGTTTATGAGCCATTTGAGACGAGTTTCTTTCCTTTAACGTCGTCCGAACATTTCACATTAAACGTTCCTCCGACCGTCAGTATGAACCTGTCCAATCAGATCGCTGTAAATTTCCAACTGTGCAGCATTTTAATAACGGACATTTCACCAGGAACACAACTGAACTATTTGTCATCTAGCACTTAggaagtaaatgtaaatgatattttaatatcaagccaaaaaaaaaaaaaagaaaaagaaaaaaaaaaaggtgttacaTTTGTCCAAGTTTGACCTGTGAAGTGTTTGGTGCATCGTTCATCGATTACAGCATTAAGTTTTTTCcgaatttttgcagtgttttttttttttttttcgtttgtttttggttttttcgTCCTGAAGTTGTTTGtaaaatggatgtttttttttaattttgagtattaaaaaaaaaacagtaaaatgtattttctaaaTCCAAACATATCATTTTGTGTCCCGTCATTAACGTGcatttaaatgttaacatttttcctcattt

Function

symbol description
unc5a Predicted to enable netrin receptor activity. Predicted to be involved in anterior/posterior axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and trunk. Orthologous to human UNC5A (unc-5 netrin receptor A).

NR:

description
netrin receptor UNC5A isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947083.2 True 6187 mRNA 0.47 16 22826944 23035173

Neighbor

gene id symbol gene type direction distance location
faf2 faf2,LOC107594931 coding downstream 63073 22755981 ~ 22763871 (-)
cdhr2 NA coding downstream 97091 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 130121 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 150196 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 182681 22629881 ~ 22644263 (-)
dok3 dok3 coding upstream 250535 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 262776 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 294596 23329769 ~ 23338185 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 356932 23392105 ~ 23428221 (-)
ube2d2l ube2d2l,ube2d2,UBE2D2,ube2d3,LOC103039786,LOC106611705,LOC105015883 coding upstream 396036 23431209 ~ 23442597 (-)
G215491 NA non-coding downstream 703 22822720 ~ 22826241 (-)
G215489 NA non-coding downstream 11692 22781323 ~ 22815252 (-)
G215493 NA non-coding downstream 29430 22788216 ~ 22797514 (-)
G215494 NA non-coding downstream 71837 22754560 ~ 22755107 (-)
G215509 NA non-coding downstream 89465 22737276 ~ 22737479 (-)
G215606 NA non-coding upstream 23440 23058613 ~ 23058821 (-)
G215608 NA non-coding upstream 30394 23065567 ~ 23065801 (-)
G215751 NA non-coding upstream 293171 23328344 ~ 23328571 (-)
G215895 NA non-coding upstream 587203 23622376 ~ 23622605 (-)
G215893 NA non-coding upstream 674379 23709552 ~ 23751577 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 47876 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 122461 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 407034 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 462679 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 505211 22321174 ~ 22321733 (-)
G215624 LOC108277208 other upstream 99746 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 277713 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 320980 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1505599 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 1646064 24681237 ~ 24804340 (-)

Expression


Co-expression Network