abhd18 (abhd18,LOC104944271)


Basic Information

Item Value
gene id abhd18
gene name abhd18,LOC104944271
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23329769 ~ 23338185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947013.2
TATGACGCAACACCGGTGCACAGTTCCAATGAACACAGTCATGGCAGCGCACTTTTGCCTGGAATTCGCCCTTTGCGATGAGAAGTAGACATTATTCCTAAACTCTCCGTTTAGTTAGAGATGCCCGGTCCTTGCTGATGGGGGTGAGCCGGCTTGATGTGCTCTACCGAAGGCTCCTCCTCACCAAGCTCTTCATCCAAGGATGGGGAAAGCCAGAGGACCTGAAACGaatATTCGAGTTTAGGAAAATCATCGGCGATCGGGAAAAATGTAAGAACCTTGTCCCACGGGACTATCCAGTTTTTATCGACAAGGTGGAGGATCACTCAGACTGCAGAATTCACAGCGGCCACTTCATTTCCCCGCTCGAACACTTTGTCCCAGGCATTTTGCCAGCAGAGTCGGTGAAAGCCAGCTTTCAGTTTATAGTTCCCAAAAAATGGAAGCAGCACAGACCGGTGTGTATCCATCTGGCAGGAACAGGAGATCACttttTCTGGAGGAGGCGGACTCTCATGGCCAGACCCATGATCAAAGAGGCAGGAATGGCGTCCCTGCTGCTGGAAAACCCGTATTATGGATACAGAAAACCTAAAGACCAGAAgcggTCCAGTCTGAAGAACGTATCTGACCTGTTTGTGATGGGCGGAGCTCTCATACTGGAGTCGGCTGCTCTCCTGCACTGGTTGGAGAGAGAGGGCTTCTGGCCGCTGGGCATGACCGGCATCTCCATGGGAGGCCATaTGGCATCTTTAGCTGTAACCAACTGGCCCAAGCCGATTCCTCTGATCCCTTGTCTTTCCTGGACTACTGCTTCGAATGTTTTTACCACTGGAGTGTTAAGTAGAGCTGTGAACTGGAGGGAACTGGAGAAGCAGTACGCCATGCACGCCGTCTACGAGGACGAGATCATCCAGATGCTGGAGTACTGCGGGACGGACTCTTTCCGGATGGGCCAGGACTTTGTGCGGGACGCCCCGGGCAGCTTCGACAAACTCTCGAACGTGTCCCTGTCTCCCGAGCTGCTGTTGCAGCAGAGGGACGCTGGGGACCGGTTGGAACACATGCTGTCGTCCTCTGTTGGTGGCAGGCAGACACACATCGACGCACTTCACAGCAAGAGCGTGAGCCGCAGCGCAAGCCAGCGTCGCTCGCTGCAGCGGGAGTCACTCTGCTTCATGAAGGGGGTGATGGACGAGTGCACACACATCGCCAACTTCTCAGTGCCGGTGGATCCCAAtctgatcatcatcatccagGCTAAAGAGGACGCCTACGTGCCTCGCTCAGGCGTGCGCAGCCTGAAGGAGGTCTGGCCTGGCTGTGAGGTTCGCTACCTCAACGGGGGCCACATTACCGCCTATCTGTTTAAACAGGCAATGTTCAGACAGGCCATTTACGATGCCTTCGAGCGTTTTGTTCAGAAGTACCCTTTATTATTATAGCCACGGATCTGTGTTGTGCCAAGGACACTGTAAAGtaaaattaatgcaactaaCATAACACACCAGGACTCACAACAGATCTGAAGCGAAACCTCTCTACACCGTGGTGCTACTGAAGAATGACTAGTGTTTACatatcattacagtataacGTTTATAGACATTTATGAAATATGTCCTTAACCGCCCATGTTCGGAACGCCAAACCGCATTTCATCTACACCTTCTATcataattcaaatatatatatatatatatatattttttttttacctcctcaGCCTTTTCTTTAAACCCCAGGTGCATTTATTAATCACAGATCACTGCCAATCCTGAGGGTGCATCAGATTATAAATCACGTTTTAtgatttgaaaaattaaaatattatcatttgcattattattcttttttatccCTTGAACGATTTATTTCCTACATGTAATAACTACTTTTCCAACCCTTCATATTTCTGTATCTCAACTCTGAAATAAAAAGCACACTTTGAAGACTGA

Function

symbol description
abhd18 Orthologous to human ABHD18 (abhydrolase domain containing 18).

NR:

description
protein ABHD18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947013.2 True 1958 mRNA 0.48 13 23329769 23338185

Neighbor

gene id symbol gene type direction distance location
LOC113546952 ddx41,LOC107749764,LOC107750345 coding downstream 20358 23297949 ~ 23309411 (-)
dok3 dok3 coding downstream 31955 23285708 ~ 23297814 (-)
unc5a unc5a,LOC107677380 coding downstream 294596 22826944 ~ 23035173 (-)
faf2 faf2,LOC107594931 coding downstream 565898 22755981 ~ 22763871 (-)
cdhr2 NA coding downstream 599916 22706554 ~ 22729853 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 53920 23392105 ~ 23428221 (-)
ube2d2l ube2d2l,ube2d2,UBE2D2,ube2d3,LOC103039786,LOC106611705,LOC105015883 coding upstream 93024 23431209 ~ 23442597 (-)
polr2b polr2b,LOC102791558,LOC107750329 coding upstream 416370 23754555 ~ 23766898 (-)
alg1 alg1,LOC107733873,LOC107680860,LOC107568161 coding upstream 439520 23777705 ~ 23783352 (-)
flr LOC108256318,LOC108436663,LOC105900006,LOC107738612,LOC107568145 coding upstream 451588 23789773 ~ 23809246 (-)
G215751 NA non-coding downstream 1198 23328344 ~ 23328571 (-)
G215608 NA non-coding downstream 263968 23065567 ~ 23065801 (-)
G215606 NA non-coding downstream 270948 23058613 ~ 23058821 (-)
G215596 NA non-coding downstream 320459 23009071 ~ 23009310 (-)
G215594 NA non-coding downstream 322972 23006594 ~ 23006797 (-)
G215895 NA non-coding upstream 284191 23622376 ~ 23622605 (-)
G215893 NA non-coding upstream 371367 23709552 ~ 23751577 (-)
G216375 NA non-coding upstream 888367 24226552 ~ 24380193 (-)
G216376 NA non-coding upstream 967672 24305857 ~ 24361624 (-)
G216343 NA non-coding upstream 1047439 24385624 ~ 24396366 (-)
fam193b fam193b,LOC107579325 other downstream 1827 23312886 ~ 23327942 (-)
G215624 LOC108277208 other downstream 173103 23134919 ~ 23156666 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 550701 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 625286 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 909859 22399685 ~ 22419910 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 17968 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1202587 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 1343052 24681237 ~ 24804340 (-)
dexi dexi,LOC107590611,LOC107733843,LOC107567922 other upstream 1582669 24920854 ~ 24923257 (-)
LOC113523780 LOC108259106,LOC107654745,LOC107710331,LOC107602379,LOC108412590 other upstream 2156564 25494749 ~ 25519446 (-)

Expression


Co-expression Network