polr2b (polr2b,LOC102791558,LOC107750329)


Basic Information

Item Value
gene id polr2b
gene name polr2b,LOC102791558,LOC107750329
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23754555 ~ 23766898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310054.1
GGAAGTGACGTATATCTTATGCGCCACATACGCCGTCCGCGTAGTTCAGTGAAGTTTCTAAATAGAGCGCGTTTTAAGCGCCTAGACATCGCTGCAGATTTcattcttcatatttatttatttttaacaaggATTACAACGCCGAATCACGATGTATGACCAAGACGAAGATATCCAGTacgatgaagatgatgatgagatcACTCCTGACCTGTGGCAGGAAGCCTGCTGGATTGTTATCAGTTCCTACTTCGATGAGAAAGGGTTGGTGCGCCAGCAGCTGGACTCATTCGACGAGTTCATTCAGATGTCCGTCCAGAGGATTGTGGAGGACGCGCCACCCATCGACCTGCAGGCCGAGGCCCAGCACACCTCCGGAGAGGTGGAGGAACCGCCTCGGTACCTGCTGAAGTTTGAGCAGATCTACCTGTCCAAGCCGACTCACTGGGAAAGAGACGGCGCTCCGTCACCCATGATGCCCAACGAAGCACGACTCCGAAACCTCACgtacTCGGCTCCTCTGTACGTGGACATCACCAAGACCATCATAAAGGAGGgagaggagcagcagcagaCGCAGCACCAGAAAACCTTCATCGGCAAAATTCCCATCATGCTCCGGTCCACCTACTGCCTGCTGAGCGGCCTGACGGACCGTGACCTGTGTGAGCTGAACGAGTGTCCTCTCGACCCGGGCGGCTACTTCATCATCAACGGCTCCGAGAAGgtgCTGATCGCTCAGGAGAAAATGGCCACGAATACAGTGTACGTGTTCGCCAAGAAGGACTCGAAGTACGCCTACACCGCCGAGTGCAGGTCCTGTCTGGAGAACTCCTCCAGACCCACCAGCACCATCTGGGTCAGCATGATGGCCAGAGGAGGACAGGGAGTGAAGAAGAGCGCGATCGGTCAGAGGATCGTCTCCACATTGCCGTACATCAGACAGGAAGTTCCCATCATCATCGTGTTCCGAGCGCTGGGCTTCGTGTCCGACAGAGACATCCTGGAACACATCATCTACGACTTCGATGATCCTGAGATGATGGAGATGGTAAAACCTGTGCCTTAAAGCTTAGATCGTAGCTTCTGAGAAAGGAGCAGAAGCGTGGCTCTGAACTTCATTGGGTCCAGAGGGGCCAAACCCGGAGTCACTAAAGAGAGGAGGATAAAATACGCCAAGGAGGTTCTGCAGAAGGAAGTGCTGCCTCACGTCGGCGTGTCCGACTTCTGCGAGACCAAGAAGGCGTACTTTTTAGGttatATGGTGCACAGGCTCCTGCTGGCGGCTCTGGGCAGAAGAGAGCTGGACGACAGAGATCATTACGGCAACAAGAGGCTGGATCTGGCCGGGCCGCTCCTGGCGTTCCTCTTCCGAGGAATGTTCAAGAACCTGCTGAAGGAGATCAGGATCTACGCTCAGAAGTTCATCGACCGAGGGAAAGACTTCAACCTGGAGCTGGCCATCAAAACGCGCATCATCTCCGACGGCCTGAAGTATTCGCTGGCCACGGGGAACTGGGGCGACGTCAAGAAAGCCCATCAGGCTCGAGCCGGAGTGTCTCAGGTGTTGAACAGACTGACGTTCGCCTCAACGCTTTCTCACCTCCGGCGCGTGAACTCTCCCATCGGCCGAGACGGCAAACTGGCAAAGCCGAGGCAGCTCCATAACACCCTGTGGGGTATGGTGTGTCCCGCCGAGACGCCCGAGGGCCATGCTGTAGGTCTGGTGAAGAACTTGGCACTGATGGCGTACATCTCCGTCGGTTCTCAGCCGTCCCCCATCCTGGAGTTCTTGGAAGAGTGGAGCATGGAGAACCTAGAGGAGATCTCACCTGCTGCTATTGCAGATGCTACGAAGATCTTTGTGAACGGCTGCTGGGTGGGAATCCACAAAGACCCTGAGCAGCTGATGAACACTCTGAGGAAGCTCAGGAGGCAGATGGACATCATTGTGTCTGAGGTGTCGATGATCCGCGATATCCGAGAGCGAGAGATCCGGATTTACACGGACGCCGGGCGGATCTGTCGCCCGCTGCTAATCGTGGAGAAGCAGAAGCTCCTGCTGAAGAGACGCCACATCGATCAGCTCAAAGAACGAGAGTACAACAACTACAGctggcaGGACCTGGTAGCGAGTGGTGTAGTGGAGTACATCGATACTCTGGAAGAGGAGACAGTGATGTTGGCCATGACCCCGGATGACCTCCAGGAGAAGGGTGTGGCCTACTgctccacctacacacactgtgagaTCCATCCATCTATGATCCTGGGAGTGTGTGCATCCATCATTCCTTTCCCTGATCAcaatcagtcTCCCAGGAACACCTACCAGTCTGCTATGGGGAAGCAGGCTATGGGTGTGTACATCACCAACTTCCACGTGCGTATGGACACCCTGGCTCACGTGCTGTATTACCCTCAGAAGCCTCTGGTCACTACGCGCTCCATGGAGTACCTGCGCTTCAGAGAGCTGCCAGCAGGCATCAATTCTATCGTGGCCATCGCATCATACACGGGTTACAATCAGGAGGACTCCGTTATCATGAACCGTTCTGCCGTGGACCGAGGCTTCTTCAGGTCAGTGTTCTACCGCTCCTATAAAGAGCAGGAGTCAAAGAAAGGCTTCGACCAGGAGGAGATTTTTGAGAAACCGAAGCGTGAAGAATGTCAAGgaATGCGTCATGCCATCTACGATAAGCTGGACGATGATGGTCTGATAGCGCCGGGCGTACGCGTGTCCGGGGAAGACGTGATTATCGGAAAGACGGTCACTCTACCCGAAAACGACGACGAGCTAGACAGCACGAACCGGCGCTACACGAAGAGAGACTGCAGCACGTTCCTGCGCACCAGCGAAACCGGCATCGTCGACCAGGTCATGGTCACACTCAACCAAGAGGGCTACAAGTTCTGCAAGATCCGGGTGCGCTCGGTTCGAATCCCTCAGATTGGAGACAAGTTCGCCAGTCGACACGGACAGAAGGGAACCTGTGGGATTCAGTACAGGCAGGAGGACATGCCATTCACATGTGAAGGAATTACCCCAGACATCATCATCAACCCCCACGCTATCCCGTCCAGAATGACAGTCGGTCACTTGATCGAGTGTCTGCAGGGGAAggTTTCTGCGAATAAAGGGGAGATCGGTGACGCCACGCCATTCAACGACGCTGTGAATGTGCAGAAAGTGTCCAACCTGCTGTCTGAATATGGGTACCACCTCAGAGGAAACGAGGTGCTGTATAACGGTTTCACGGGTCGTAAGCTGACCTCTCAGATCTTCCTCGGCCCCACTTACTACCAGCGCCTCAAACACATGGTGGACGATAAGATCCACTCGAGGGCACGAGGTCCCGTCCAGATCCTCAACAGGCAGCCTATGGAGGGCAGATCACGaGACGGAGGTCTGCGTTTCGGAGAGATGGAGCGAGATTGTCAGATCGCTCACGGTGCAGCTCAGTTcctgagggagcgactgttcgAGGCGTCGGATCCCTACCAGGTGCACGTGTGTAACCTGTGCGGCCTCATGGCCATCGccaacacgcgcacacacacctacGAGTGCAGGGGCTGCCGCAACAAGACTCAGATCTCGCTGGTGCGGCTCCCGTACGCCTGCAAACTTCTCTTCCAGGAGCTCATGTCTATGAGCATCGCCCCACGCATGATGACCACCTAAACACCGCACCACTGAATCATGGGAAACAGGAAAATCCAGGTTAAAGTGCTTTTCCGATCAGAAATGCAGTGCATTCTGCCGAGGCTTGATAAGTGTACTTGCAGTAATTTTCTCGTCGTTCTCGCTTCATAAGCaaaatgattgtgtttttttgtaaaatgtagAATGAAATAAAgctcttttctttgttttga

Function

symbol description
polr2b Predicted to enable several functions, including DNA binding activity; metal ion binding activity; and ribonucleoside binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2B (RNA polymerase II subunit B).

NR:

description
DNA-directed RNA polymerase II subunit RPB2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03010 RPB2, POLR2B; DNA-directed RNA polymerase II subunit RPB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310054.1 True 3879 mRNA 0.54 25 23754555 23766898

Neighbor

gene id symbol gene type direction distance location
ube2d2l ube2d2l,ube2d2,UBE2D2,ube2d3,LOC103039786,LOC106611705,LOC105015883 coding downstream 311958 23431209 ~ 23442597 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding downstream 326334 23392105 ~ 23428221 (-)
abhd18 abhd18,LOC104944271 coding downstream 416370 23329769 ~ 23338185 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding downstream 445144 23297949 ~ 23309411 (-)
dok3 dok3 coding downstream 456741 23285708 ~ 23297814 (-)
alg1 alg1,LOC107733873,LOC107680860,LOC107568161 coding upstream 10807 23777705 ~ 23783352 (-)
flr LOC108256318,LOC108436663,LOC105900006,LOC107738612,LOC107568145 coding upstream 22875 23789773 ~ 23809246 (-)
sept12 sept12,LOC107733855,LOC107568113,LOC107690244,LOC107738615 coding upstream 155143 23922041 ~ 23992854 (-)
LOC113546964 tmem114 coding upstream 578111 24345009 ~ 24364179 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589 coding upstream 653043 24419941 ~ 24444188 (-)
G215893 NA non-coding downstream 2978 23709552 ~ 23751577 (-)
G215895 NA non-coding downstream 131950 23622376 ~ 23622605 (-)
G215751 NA non-coding downstream 425984 23328344 ~ 23328571 (-)
G215608 NA non-coding downstream 688754 23065567 ~ 23065801 (-)
G215606 NA non-coding downstream 695734 23058613 ~ 23058821 (-)
G216375 NA non-coding upstream 459654 24226552 ~ 24380193 (-)
G216376 NA non-coding upstream 538959 24305857 ~ 24361624 (-)
G216343 NA non-coding upstream 618726 24385624 ~ 24396366 (-)
G216528 NA non-coding upstream 913649 24680547 ~ 24681227 (-)
G216541 NA non-coding upstream 968519 24735417 ~ 24735627 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other downstream 365296 23356153 ~ 23389259 (-)
fam193b fam193b,LOC107579325 other downstream 426613 23312886 ~ 23327942 (-)
G215624 LOC108277208 other downstream 597889 23134919 ~ 23156666 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 975487 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 1050072 22656542 ~ 22704483 (-)
usp7 usp7 other upstream 773874 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 914339 24681237 ~ 24804340 (-)
dexi dexi,LOC107590611,LOC107733843,LOC107567922 other upstream 1153956 24920854 ~ 24923257 (-)
LOC113523780 LOC108259106,LOC107654745,LOC107710331,LOC107602379,LOC108412590 other upstream 1727851 25494749 ~ 25519446 (-)
LOC117598996 NA other upstream 2068805 25835703 ~ 25893695 (-)

Expression


Co-expression Network