G215608


Basic Information

Item Value
gene id G215608
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23065567 ~ 23065801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255407
ATTCACTATGTATTTACACAAAGTTAAAAGTTTCTTTACTTTCTTCTCTGTGAGTTCAATGATCACACACTGAATAGAAGCGTCCGAGTTGGCACTTGactttaagcctgaaaaaatcAGGCATATAAAATGTGGACGTTGGAaggaaattgttttttttttttttctttgttttcaaatagcacttgatccagcacattttattataacttAATGTAACCCTGTGctactaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255407 True 235 lncRNA 0.32 1 23065567 23065801

Neighbor

gene id symbol gene type direction distance location
unc5a unc5a,LOC107677380 coding downstream 30394 22826944 ~ 23035173 (-)
faf2 faf2,LOC107594931 coding downstream 301696 22755981 ~ 22763871 (-)
cdhr2 NA coding downstream 335714 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 368744 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 388819 22661560 ~ 22676748 (-)
dok3 dok3 coding upstream 219907 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 232148 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 263968 23329769 ~ 23338185 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 326304 23392105 ~ 23428221 (-)
ube2d2l ube2d2l,ube2d2,UBE2D2,ube2d3,LOC103039786,LOC106611705,LOC105015883 coding upstream 365408 23431209 ~ 23442597 (-)
G215606 NA non-coding downstream 6746 23058613 ~ 23058821 (-)
G215596 NA non-coding downstream 56257 23009071 ~ 23009310 (-)
G215594 NA non-coding downstream 58770 23006594 ~ 23006797 (-)
G215589 NA non-coding downstream 66101 22999221 ~ 22999466 (-)
G215568 NA non-coding downstream 103411 22961940 ~ 22962156 (-)
G215751 NA non-coding upstream 262543 23328344 ~ 23328571 (-)
G215895 NA non-coding upstream 556575 23622376 ~ 23622605 (-)
G215893 NA non-coding upstream 643751 23709552 ~ 23751577 (-)
G216375 NA non-coding upstream 1160751 24226552 ~ 24380193 (-)
G216376 NA non-coding upstream 1240056 24305857 ~ 24361624 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 286499 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 361084 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 645657 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 701302 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 743834 22321174 ~ 22321733 (-)
G215624 LOC108277208 other upstream 69118 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 247085 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 290352 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1474971 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 1615436 24681237 ~ 24804340 (-)

Expression


Co-expression Network