G215568


Basic Information

Item Value
gene id G215568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22961940 ~ 22962156 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255367
GGTGCTTCAGTTTCCCAGTGCAAAGCCAATATACGTTTAGTCATATAACAAAACTGAATGTGAATTAGATGATTAGACGCCACCTCTATCTCAACAAACTATttagaaactttaaaaaaaaacacacctgcacacacacacaaatgtagatttctcatattttcagtgtgaagcTAATTAACTAGATCTTTTCATAACCCTTTTTACTgagagtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255367 True 217 lncRNA 0.35 1 22961940 22962156

Neighbor

gene id symbol gene type direction distance location
faf2 faf2,LOC107594931 coding downstream 198069 22755981 ~ 22763871 (-)
cdhr2 NA coding downstream 232087 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 265117 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 285192 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 317677 22629881 ~ 22644263 (-)
dok3 dok3 coding upstream 323552 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 335793 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 367613 23329769 ~ 23338185 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 429949 23392105 ~ 23428221 (-)
ube2d2l ube2d2l,ube2d2,UBE2D2,ube2d3,LOC103039786,LOC106611705,LOC105015883 coding upstream 469053 23431209 ~ 23442597 (-)
G215491 NA non-coding downstream 135699 22822720 ~ 22826241 (-)
G215489 NA non-coding downstream 146688 22781323 ~ 22815252 (-)
G215493 NA non-coding downstream 164426 22788216 ~ 22797514 (-)
G215494 NA non-coding downstream 206833 22754560 ~ 22755107 (-)
G215509 NA non-coding downstream 224461 22737276 ~ 22737479 (-)
G215589 NA non-coding upstream 37065 22999221 ~ 22999466 (-)
G215594 NA non-coding upstream 44438 23006594 ~ 23006797 (-)
G215596 NA non-coding upstream 46915 23009071 ~ 23009310 (-)
G215606 NA non-coding upstream 96457 23058613 ~ 23058821 (-)
G215608 NA non-coding upstream 103411 23065567 ~ 23065801 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 182872 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 257457 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 542030 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 597675 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 640207 22321174 ~ 22321733 (-)
G215624 LOC108277208 other upstream 172763 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 350730 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 393997 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1578616 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 1719081 24681237 ~ 24804340 (-)

Expression


Co-expression Network